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TNP1 (transition protein 1)

Identity

Alias (NCBI)TP1
HGNC (Hugo) TNP1
HGNC Alias namespermatid nuclear transition protein 1
HGNC Previous nametransition protein 1 (during histone to protamine replacement)
LocusID (NCBI) 7141
Atlas_Id 42647
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 216859459 and ends at 216860064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNP1   11951
Cards
Entrez_Gene (NCBI)TNP1    transition protein 1
AliasesTP1
GeneCards (Weizmann)TNP1
Ensembl hg19 (Hinxton)ENSG00000118245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118245 [Gene_View]  ENSG00000118245 [Sequence]  chr2:216859459-216860064 [Contig_View]  TNP1 [Vega]
ICGC DataPortalENSG00000118245
TCGA cBioPortalTNP1
AceView (NCBI)TNP1
Genatlas (Paris)TNP1
SOURCE (Princeton)TNP1
Genetics Home Reference (NIH)TNP1
Genomic and cartography
GoldenPath hg38 (UCSC)TNP1  -     chr2:216859459-216860064 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNP1  -     2q35   [Description]    (hg19-Feb_2009)
GoldenPathTNP1 - 2q35 [CytoView hg19]  TNP1 - 2q35 [CytoView hg38]
ImmunoBaseENSG00000118245
Genome Data Viewer NCBITNP1 [Mapview hg19]  
OMIM190231   
Gene and transcription
Genbank (Entrez)BC029516 X07948
RefSeq transcript (Entrez)NM_003284
Consensus coding sequences : CCDS (NCBI)TNP1
Gene ExpressionTNP1 [ NCBI-GEO ]   TNP1 [ EBI - ARRAY_EXPRESS ]   TNP1 [ SEEK ]   TNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNP1 [ Firebrowse - Broad ]
GenevisibleExpression of TNP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7141
GTEX Portal (Tissue expression)TNP1
Human Protein AtlasENSG00000118245-TNP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09430   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09430  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09430
PhosPhoSitePlusP09430
Domaine pattern : Prosite (Expaxy)TP1 (PS00541)   
Domains : Interpro (EBI)Nuclear_transition_prot1    Nuclear_transition_prot1_CS   
Domain families : Pfam (Sanger)TP1 (PF02079)   
Domain families : Pfam (NCBI)pfam02079   
Conserved Domain (NCBI)TNP1
SuperfamilyP09430
AlphaFold pdb e-kbP09430   
Human Protein Atlas [tissue]ENSG00000118245-TNP1 [tissue]
HPRD01830
Protein Interaction databases
DIP (DOE-UCLA)P09430
IntAct (EBI)P09430
BioGRIDTNP1
STRING (EMBL)TNP1
ZODIACTNP1
Ontologies - Pathways
QuickGOP09430
Ontology : AmiGOsingle strand break repair  nucleosome  nucleosome  nucleosome  male germ cell nucleus  DNA binding  DNA binding  protein binding  nucleus  nucleosome disassembly  chromatin remodeling  chromatin remodeling  chromatin silencing  multicellular organism development  spermatid development  spermatid nucleus differentiation  spermatid nucleus elongation  spermatid nucleus elongation  positive regulation of protein processing  sexual reproduction  flagellated sperm motility  fertilization, exchange of chromosomal proteins  spermatogenesis, exchange of chromosomal proteins  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIsingle strand break repair  nucleosome  nucleosome  nucleosome  male germ cell nucleus  DNA binding  DNA binding  protein binding  nucleus  nucleosome disassembly  chromatin remodeling  chromatin remodeling  chromatin silencing  multicellular organism development  spermatid development  spermatid nucleus differentiation  spermatid nucleus elongation  spermatid nucleus elongation  positive regulation of protein processing  sexual reproduction  flagellated sperm motility  fertilization, exchange of chromosomal proteins  spermatogenesis, exchange of chromosomal proteins  negative regulation of transcription, DNA-templated  
NDEx NetworkTNP1
Atlas of Cancer Signalling NetworkTNP1
Wikipedia pathwaysTNP1
Orthology - Evolution
OrthoDB7141
GeneTree (enSembl)ENSG00000118245
Phylogenetic Trees/Animal Genes : TreeFamTNP1
Homologs : HomoloGeneTNP1
Homology/Alignments : Family Browser (UCSC)TNP1
Gene fusions - Rearrangements
Fusion : QuiverTNP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNP1
dbVarTNP1
ClinVarTNP1
MonarchTNP1
1000_GenomesTNP1 
Exome Variant ServerTNP1
GNOMAD BrowserENSG00000118245
Varsome BrowserTNP1
ACMGTNP1 variants
VarityP09430
Genomic Variants (DGV)TNP1 [DGVbeta]
DECIPHERTNP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNP1 
Mutations
ICGC Data PortalTNP1 
TCGA Data PortalTNP1 
Broad Tumor PortalTNP1
OASIS PortalTNP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNP1
Mutations and Diseases : HGMDTNP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNP1
DgiDB (Drug Gene Interaction Database)TNP1
DoCM (Curated mutations)TNP1
CIViC (Clinical Interpretations of Variants in Cancer)TNP1
Cancer3DTNP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM190231   
Orphanet
DisGeNETTNP1
MedgenTNP1
Genetic Testing Registry TNP1
NextProtP09430 [Medical]
GENETestsTNP1
Target ValidationTNP1
Huge Navigator TNP1 [HugePedia]
ClinGenTNP1
Clinical trials, drugs, therapy
MyCancerGenomeTNP1
Protein Interactions : CTDTNP1
Pharm GKB GenePA36640
PharosP09430
Clinical trialTNP1
Miscellaneous
canSAR (ICR)TNP1
HarmonizomeTNP1
DataMed IndexTNP1
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:49 CEST 2021

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