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TNP1 (transition protein 1)

Identity

Alias_namestransition protein 1 (during histone to protamine replacement)
Other aliasTP1
HGNC (Hugo) TNP1
LocusID (NCBI) 7141
Atlas_Id 42647
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 216859459 and ends at 216860059 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNP1   11951
Cards
Entrez_Gene (NCBI)TNP1  7141  transition protein 1
AliasesTP1
GeneCards (Weizmann)TNP1
Ensembl hg19 (Hinxton)ENSG00000118245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118245 [Gene_View]  chr2:216859459-216860059 [Contig_View]  TNP1 [Vega]
ICGC DataPortalENSG00000118245
TCGA cBioPortalTNP1
AceView (NCBI)TNP1
Genatlas (Paris)TNP1
WikiGenes7141
SOURCE (Princeton)TNP1
Genetics Home Reference (NIH)TNP1
Genomic and cartography
GoldenPath hg38 (UCSC)TNP1  -     chr2:216859459-216860059 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNP1  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblTNP1 - 2q35 [CytoView hg19]  TNP1 - 2q35 [CytoView hg38]
Mapping of homologs : NCBITNP1 [Mapview hg19]  TNP1 [Mapview hg38]
OMIM190231   
Gene and transcription
Genbank (Entrez)BC029516 HQ448184 X07948
RefSeq transcript (Entrez)NM_003284
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNP1
Cluster EST : UnigeneHs.3017 [ NCBI ]
CGAP (NCI)Hs.3017
Alternative Splicing GalleryENSG00000118245
Gene ExpressionTNP1 [ NCBI-GEO ]   TNP1 [ EBI - ARRAY_EXPRESS ]   TNP1 [ SEEK ]   TNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TNP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7141
GTEX Portal (Tissue expression)TNP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09430   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09430  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09430
Splice isoforms : SwissVarP09430
PhosPhoSitePlusP09430
Domaine pattern : Prosite (Expaxy)TP1 (PS00541)   
Domains : Interpro (EBI)Nuclear_transition_prot1    Nuclear_transition_prot1_CS   
Domain families : Pfam (Sanger)TP1 (PF02079)   
Domain families : Pfam (NCBI)pfam02079   
Domain structure : Prodom (Prabi Lyon)TP1 (PD010292)   
Conserved Domain (NCBI)TNP1
DMDM Disease mutations7141
Blocks (Seattle)TNP1
SuperfamilyP09430
Human Protein AtlasENSG00000118245
Peptide AtlasP09430
HPRD01830
IPIIPI00216238   
Protein Interaction databases
DIP (DOE-UCLA)P09430
IntAct (EBI)P09430
FunCoupENSG00000118245
BioGRIDTNP1
STRING (EMBL)TNP1
ZODIACTNP1
Ontologies - Pathways
QuickGOP09430
Ontology : AmiGOsingle strand break repair  nucleosome  male germ cell nucleus  DNA binding  protein binding  nucleosome disassembly  chromatin remodeling  chromatin silencing  multicellular organism development  spermatid development  spermatid nucleus differentiation  spermatid nucleus elongation  sexual reproduction  flagellated sperm motility  fertilization, exchange of chromosomal proteins  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIsingle strand break repair  nucleosome  male germ cell nucleus  DNA binding  protein binding  nucleosome disassembly  chromatin remodeling  chromatin silencing  multicellular organism development  spermatid development  spermatid nucleus differentiation  spermatid nucleus elongation  sexual reproduction  flagellated sperm motility  fertilization, exchange of chromosomal proteins  negative regulation of transcription, DNA-templated  
NDEx NetworkTNP1
Atlas of Cancer Signalling NetworkTNP1
Wikipedia pathwaysTNP1
Orthology - Evolution
OrthoDB7141
GeneTree (enSembl)ENSG00000118245
Phylogenetic Trees/Animal Genes : TreeFamTNP1
HOVERGENP09430
HOGENOMP09430
Homologs : HomoloGeneTNP1
Homology/Alignments : Family Browser (UCSC)TNP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNP1
dbVarTNP1
ClinVarTNP1
1000_GenomesTNP1 
Exome Variant ServerTNP1
ExAC (Exome Aggregation Consortium)TNP1 (select the gene name)
Genetic variants : HAPMAP7141
Genomic Variants (DGV)TNP1 [DGVbeta]
DECIPHERTNP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNP1 
Mutations
ICGC Data PortalTNP1 
TCGA Data PortalTNP1 
Broad Tumor PortalTNP1
OASIS PortalTNP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNP1
DgiDB (Drug Gene Interaction Database)TNP1
DoCM (Curated mutations)TNP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNP1 (select a term)
intoGenTNP1
Cancer3DTNP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM190231   
Orphanet
MedgenTNP1
Genetic Testing Registry TNP1
NextProtP09430 [Medical]
TSGene7141
GENETestsTNP1
Target ValidationTNP1
Huge Navigator TNP1 [HugePedia]
snp3D : Map Gene to Disease7141
BioCentury BCIQTNP1
ClinGenTNP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7141
Chemical/Pharm GKB GenePA36640
Clinical trialTNP1
Miscellaneous
canSAR (ICR)TNP1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNP1
EVEXTNP1
GoPubMedTNP1
iHOPTNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:17:22 CEST 2017

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