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TNR (tenascin R)

Identity

Other namesTN-R
HGNC (Hugo) TNR
LocusID (NCBI) 7143
Location 1q25.1
Location_base_pair Starts at 175291935 and ends at 175712752 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNR   11953
Entrez_Gene (NCBI)TNR  7143  tenascin R
Cards
GeneCards (Weizmann)TNR
Ensembl (Hinxton)ENSG00000116147 [Gene_View]  chr1:175291935-175712752 [Contig_View]  TNR [Vega]
AceView (NCBI)TNR
Genatlas (Paris)TNR
SOURCE (Stanford)NM_003285
Genomic and cartography
GoldenPath (UCSC)TNR  -  1q25.1   chr1:175291935-175712752 -  1q25.1   [Description]    (hg19-Feb_2009)
EnsemblTNR - 1q25.1 [CytoView]
Mapping of homologs : NCBITNR [Mapview]
OMIM601995   
Gene and transcription
Genbank (Entrez)AK295823 AV650210 BC129830 DA804585 DB068074
RefSeq transcript (SRS)NM_003285
RefSeq transcript (Entrez)NM_003285
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004077999
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004077999
Consensus coding sequences : CCDS (NCBI)TNR
Cluster EST : UnigeneHs.659864 [ SRS ] Hs.659864 [ NCBI ]
CGAP (NCI)Hs.659864
Alternative Splicing : Fast-db (Paris)GSHG0002759
Alternative Splicing GalleryENSG00000116147
Gene ExpressionTNR [ NCBI-GEO ]   TNR [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92752 (SRS) Q92752 (Uniprot)
NextProtQ92752
With graphics : InterProQ92752
Splice isoforms : SwissVarQ92752(Swissvar)
Domaine pattern : Prosite (SRS)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)    FN3 (PS50853)   
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)    FN3 (PS50853)   
Domains : Interpro (SRS)EGF-like_CS    EGF_extracell    Fibrinogen_a/b/g_C    Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibronectin_type3    Ig-like_fold   
Domains : Interpro (EBI)EGF-like_CS    EGF_extracell    Fibrinogen_a/b/g_C    Fibrinogen_a/b/g_C_1    Fibrinogen_a/b/g_C_2    Fibronectin_type3    Ig-like_fold   
Related proteins : CluSTrQ92752
Domain families : Pfam (SRS)EGF_2 (PF07974)    Fibrinogen_C (PF00147)    fn3 (PF00041)   
Domain families : Pfam (Sanger)EGF_2 (PF07974)    Fibrinogen_C (PF00147)    fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam07974    pfam00147    pfam00041   
Domain families : Smart (EMBL)FBG (SM00186)  FN3 (SM00060)  
DMDM7143
Blocks (Seattle)Q92752
Human Protein AtlasENSG00000116147
HPRD03589
IPIIPI00160552   IPI00554760   IPI00514663   
Protein Interaction databases
DIP (DOE-UCLA)Q92752
IntAct (EBI)Q92752
FunCoupENSG00000116147
REACTOMETNR
Protein Interaction Database7143
BioGRIDTNR
InParanoidQ92752
Interologous Interaction database Q92752
IntegromeDBTNR
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TNR
SNP (GeneSNP Utah)TNR
SNP : HGBaseTNR
Genetic variants : HAPMAPTNR
Somatic Mutations in Cancer : COSMICTNR 
CONAN: Copy Number AnalysisTNR 
Mutations and Diseases : HGMDTNR
OMIM601995   
GENETests601995   
Disease Genetic AssociationTNR
Huge Navigator TNR [HugePedia]  TNR [HugeCancerGEM]
Genomic VariantsTNR  TNR [DGVbeta]
snp3D : Map Gene to Disease7143
General knowledge
Homologs : HomoloGeneTNR
Homology/Alignments : Family Browser (UCSC)TNR
Phylogenetic Trees/Animal Genes : TreeFamTNR
Chemical/Protein Interactions : CTD7143
Chemical/Pharm GKB GenePA36642
Clinical trialTNR
Cancer Resource (Charite)ENSG00000116147
Ontology : AmiGOintegrin binding  proteinaceous extracellular matrix  nucleus  nucleolus  cytoplasm  cell adhesion  neuron cell-cell adhesion  signal transduction  axon guidance  associative learning  cell surface  telencephalon cell migration  negative regulation of cell-cell adhesion  extracellular matrix organization  locomotory exploration behavior  membrane raft  negative regulation of axon extension involved in regeneration  negative regulation of synaptic transmission  synapse organization  neuromuscular process controlling balance  positive regulation of synaptic transmission, glutamatergic  long-term synaptic potentiation  perineuronal net  
Ontology : EGO-EBIintegrin binding  proteinaceous extracellular matrix  nucleus  nucleolus  cytoplasm  cell adhesion  neuron cell-cell adhesion  signal transduction  axon guidance  associative learning  cell surface  telencephalon cell migration  negative regulation of cell-cell adhesion  extracellular matrix organization  locomotory exploration behavior  membrane raft  negative regulation of axon extension involved in regeneration  negative regulation of synaptic transmission  synapse organization  neuromuscular process controlling balance  positive regulation of synaptic transmission, glutamatergic  long-term synaptic potentiation  perineuronal net  
Pathways : KEGGCell CommunicationECM-receptor interactionFocal adhesion
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
PubGeneTNR
iHOPTNR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:19:50 CEST 2013
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