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TNR (tenascin R)

Identity

Alias (NCBI)TN-R
HGNC (Hugo) TNR
HGNC Alias namerestrictin
 janusin
LocusID (NCBI) 7143
Atlas_Id 42649
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 175315195 and ends at 175743595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CREBBP (16p13.3) / TNR (1q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNR   11953
Cards
Entrez_Gene (NCBI)TNR    tenascin R
AliasesTN-R
GeneCards (Weizmann)TNR
Ensembl hg19 (Hinxton)ENSG00000116147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116147 [Gene_View]  ENSG00000116147 [Sequence]  chr1:175315195-175743595 [Contig_View]  TNR [Vega]
ICGC DataPortalENSG00000116147
TCGA cBioPortalTNR
AceView (NCBI)TNR
Genatlas (Paris)TNR
SOURCE (Princeton)TNR
Genetics Home Reference (NIH)TNR
Genomic and cartography
GoldenPath hg38 (UCSC)TNR  -     chr1:175315195-175743595 -  1q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNR  -     1q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTNR - 1q25.1 [CytoView hg19]  TNR - 1q25.1 [CytoView hg38]
ImmunoBaseENSG00000116147
Genome Data Viewer NCBITNR [Mapview hg19]  
OMIM601995   
Gene and transcription
Genbank (Entrez)AK295823 AV650210 BC129830 DA804585 DB068074
RefSeq transcript (Entrez)NM_001328635 NM_003285
Consensus coding sequences : CCDS (NCBI)TNR
Gene ExpressionTNR [ NCBI-GEO ]   TNR [ EBI - ARRAY_EXPRESS ]   TNR [ SEEK ]   TNR [ MEM ]
Gene Expression Viewer (FireBrowse)TNR [ Firebrowse - Broad ]
GenevisibleExpression of TNR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7143
GTEX Portal (Tissue expression)TNR
Human Protein AtlasENSG00000116147-TNR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92752   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92752  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92752
PhosPhoSitePlusQ92752
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    FIBRINOGEN_C_2 (PS51406)    FN3 (PS50853)   
Domains : Interpro (EBI)EGF-like_dom    EGF_extracell    EGF_Tenascin    Fibrinogen-like_C    Fibrinogen_a/b/g_C_dom    FN3_dom    FN3_sf    Ig-like_fold    TNR   
Domain families : Pfam (Sanger)EGF_2 (PF07974)    EGF_Tenascin (PF18720)    Fibrinogen_C (PF00147)    fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam07974    pfam18720    pfam00147    pfam00041   
Domain families : Smart (EMBL)EGF (SM00181)  FBG (SM00186)  FN3 (SM00060)  
Conserved Domain (NCBI)TNR
SuperfamilyQ92752
AlphaFold pdb e-kbQ92752   
Human Protein Atlas [tissue]ENSG00000116147-TNR [tissue]
HPRD03589
Protein Interaction databases
DIP (DOE-UCLA)Q92752
IntAct (EBI)Q92752
BioGRIDTNR
STRING (EMBL)TNR
ZODIACTNR
Ontologies - Pathways
QuickGOQ92752
Ontology : AmiGOsignaling receptor binding  extracellular region  extracellular space  cell adhesion  neuron cell-cell adhesion  axon guidance  associative learning  cell surface  telencephalon cell migration  negative regulation of cell-cell adhesion  extracellular matrix organization  locomotory exploration behavior  membrane raft  negative regulation of axon extension involved in regeneration  negative regulation of synaptic transmission  synapse organization  neuromuscular process controlling balance  positive regulation of synaptic transmission, glutamatergic  positive regulation of transmission of nerve impulse  long-term synaptic potentiation  collagen-containing extracellular matrix  perineuronal net  Schaffer collateral - CA1 synapse  glutamatergic synapse  
Ontology : EGO-EBIsignaling receptor binding  extracellular region  extracellular space  cell adhesion  neuron cell-cell adhesion  axon guidance  associative learning  cell surface  telencephalon cell migration  negative regulation of cell-cell adhesion  extracellular matrix organization  locomotory exploration behavior  membrane raft  negative regulation of axon extension involved in regeneration  negative regulation of synaptic transmission  synapse organization  neuromuscular process controlling balance  positive regulation of synaptic transmission, glutamatergic  positive regulation of transmission of nerve impulse  long-term synaptic potentiation  collagen-containing extracellular matrix  perineuronal net  Schaffer collateral - CA1 synapse  glutamatergic synapse  
Pathways : KEGGPI3K-Akt signaling pathway    Focal adhesion    ECM-receptor interaction    MicroRNAs in cancer   
NDEx NetworkTNR
Atlas of Cancer Signalling NetworkTNR
Wikipedia pathwaysTNR
Orthology - Evolution
OrthoDB7143
GeneTree (enSembl)ENSG00000116147
Phylogenetic Trees/Animal Genes : TreeFamTNR
Homologs : HomoloGeneTNR
Homology/Alignments : Family Browser (UCSC)TNR
Gene fusions - Rearrangements
Fusion : QuiverTNR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNR
dbVarTNR
ClinVarTNR
MonarchTNR
1000_GenomesTNR 
Exome Variant ServerTNR
GNOMAD BrowserENSG00000116147
Varsome BrowserTNR
ACMGTNR variants
VarityQ92752
Genomic Variants (DGV)TNR [DGVbeta]
DECIPHERTNR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNR 
Mutations
ICGC Data PortalTNR 
TCGA Data PortalTNR 
Broad Tumor PortalTNR
OASIS PortalTNR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNR
Mutations and Diseases : HGMDTNR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNR
DgiDB (Drug Gene Interaction Database)TNR
DoCM (Curated mutations)TNR
CIViC (Clinical Interpretations of Variants in Cancer)TNR
Cancer3DTNR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601995   
Orphanet
DisGeNETTNR
MedgenTNR
Genetic Testing Registry TNR
NextProtQ92752 [Medical]
GENETestsTNR
Target ValidationTNR
Huge Navigator TNR [HugePedia]
ClinGenTNR
Clinical trials, drugs, therapy
MyCancerGenomeTNR
Protein Interactions : CTDTNR
Pharm GKB GenePA36642
PharosQ92752
Clinical trialTNR
Miscellaneous
canSAR (ICR)TNR
HarmonizomeTNR
DataMed IndexTNR
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:50 CEST 2021

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