Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TNRC18 (trinucleotide repeat containing 18)

Identity

Alias (NCBI)CAGL79
TNRC18A
HGNC (Hugo) TNRC18
HGNC Alias symbCAGL79
TNRC18A
KIAA1856
LocusID (NCBI) 84629
Atlas_Id 54717
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 5306792 and ends at 5423546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C6orf48 (6p21.33) / TNRC18 (7p22.1)EIF3D (22q12.3) / TNRC18 (7p22.1)ENO2 (12p13.31) / TNRC18 (7p22.1)
ERCC1 (19q13.32) / TNRC18 (7p22.1)IFI6 (1p36.11) / TNRC18 (7p22.1)IGDCC3 (15q22.31) / TNRC18 (7p22.1)
KMT2A (11q23.3) / TNRC18 (7p22.1)MAPK8IP3 (16p13.3) / TNRC18 (7p22.1)TNRC18 (7p22.1) / ADAP1 (7p22.3)
TNRC18 (7p22.1) / GLS (2q32.2)TNRC18 (7p22.1) / HMGN3 (6q14.1)TNRC18 (7p22.1) / RNF216 (7p22.1)
TNRC18 (7p22.1) / SLC9A3R1 (17q25.1)TNRC18 (7p22.1) / TGS1 (8q12.1)TNRC18 (7p22.1) / TNRC18 (7p22.1)
TNRC18 7p22.1 / RNF216 7p22.1TNRC18 7p22.1 / TGS1 8q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(2;7)(p15;p22) XPO1/TNRC18
t(7;7)(p22;p22) GET4/TNRC18
t(7;11)(p22;q23) KMT2A/TNRC18


External links

 

Nomenclature
HGNC (Hugo)TNRC18   11962
Cards
Entrez_Gene (NCBI)TNRC18    trinucleotide repeat containing 18
AliasesCAGL79; TNRC18A
GeneCards (Weizmann)TNRC18
Ensembl hg19 (Hinxton)ENSG00000182095 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182095 [Gene_View]  ENSG00000182095 [Sequence]  chr7:5306792-5423546 [Contig_View]  TNRC18 [Vega]
ICGC DataPortalENSG00000182095
TCGA cBioPortalTNRC18
AceView (NCBI)TNRC18
Genatlas (Paris)TNRC18
SOURCE (Princeton)TNRC18
Genetics Home Reference (NIH)TNRC18
Genomic and cartography
GoldenPath hg38 (UCSC)TNRC18  -     chr7:5306792-5423546 -  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNRC18  -     7p22.1   [Description]    (hg19-Feb_2009)
GoldenPathTNRC18 - 7p22.1 [CytoView hg19]  TNRC18 - 7p22.1 [CytoView hg38]
ImmunoBaseENSG00000182095
Genome Data Viewer NCBITNRC18 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB058759 AI567212 AI738451 AK027341 AY129022
RefSeq transcript (Entrez)NM_001013722 NM_001080495
Consensus coding sequences : CCDS (NCBI)TNRC18
Gene ExpressionTNRC18 [ NCBI-GEO ]   TNRC18 [ EBI - ARRAY_EXPRESS ]   TNRC18 [ SEEK ]   TNRC18 [ MEM ]
Gene Expression Viewer (FireBrowse)TNRC18 [ Firebrowse - Broad ]
GenevisibleExpression of TNRC18 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84629
GTEX Portal (Tissue expression)TNRC18
Human Protein AtlasENSG00000182095-TNRC18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15417   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15417  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15417
PhosPhoSitePlusO15417
Domaine pattern : Prosite (Expaxy)BAH (PS51038)   
Domains : Interpro (EBI)BAH_dom    BAH_sf   
Domain families : Pfam (Sanger)BAH (PF01426)   
Domain families : Pfam (NCBI)pfam01426   
Domain families : Smart (EMBL)BAH (SM00439)  
Conserved Domain (NCBI)TNRC18
SuperfamilyO15417
AlphaFold pdb e-kbO15417   
Human Protein Atlas [tissue]ENSG00000182095-TNRC18 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O15417
IntAct (EBI)O15417
BioGRIDTNRC18
STRING (EMBL)TNRC18
ZODIACTNRC18
Ontologies - Pathways
QuickGOO15417
Ontology : AmiGOchromatin binding  nucleoplasm  mitochondrion  cytosol  nuclear membrane  
Ontology : EGO-EBIchromatin binding  nucleoplasm  mitochondrion  cytosol  nuclear membrane  
NDEx NetworkTNRC18
Atlas of Cancer Signalling NetworkTNRC18
Wikipedia pathwaysTNRC18
Orthology - Evolution
OrthoDB84629
GeneTree (enSembl)ENSG00000182095
Phylogenetic Trees/Animal Genes : TreeFamTNRC18
Homologs : HomoloGeneTNRC18
Homology/Alignments : Family Browser (UCSC)TNRC18
Gene fusions - Rearrangements
Fusion : MitelmanTNRC18/RNF216 [7p22.1/7p22.1]  
Fusion : MitelmanTNRC18/SLC9A3R1 [7p22.1/17q25.1]  
Fusion : MitelmanTNRC18/TGS1 [7p22.1/8q12.1]  
Fusion : QuiverTNRC18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNRC18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNRC18
dbVarTNRC18
ClinVarTNRC18
MonarchTNRC18
1000_GenomesTNRC18 
Exome Variant ServerTNRC18
GNOMAD BrowserENSG00000182095
Varsome BrowserTNRC18
ACMGTNRC18 variants
VarityO15417
Genomic Variants (DGV)TNRC18 [DGVbeta]
DECIPHERTNRC18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNRC18 
Mutations
ICGC Data PortalTNRC18 
TCGA Data PortalTNRC18 
Broad Tumor PortalTNRC18
OASIS PortalTNRC18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNRC18  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTNRC18
Mutations and Diseases : HGMDTNRC18
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNRC18
DgiDB (Drug Gene Interaction Database)TNRC18
DoCM (Curated mutations)TNRC18
CIViC (Clinical Interpretations of Variants in Cancer)TNRC18
Cancer3DTNRC18
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTNRC18
MedgenTNRC18
Genetic Testing Registry TNRC18
NextProtO15417 [Medical]
GENETestsTNRC18
Target ValidationTNRC18
Huge Navigator TNRC18 [HugePedia]
ClinGenTNRC18
Clinical trials, drugs, therapy
MyCancerGenomeTNRC18
Protein Interactions : CTDTNRC18
Pharm GKB GenePA36649
PharosO15417
Clinical trialTNRC18
Miscellaneous
canSAR (ICR)TNRC18
HarmonizomeTNRC18
DataMed IndexTNRC18
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNRC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:51 CEST 2021

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