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TNRC18 (trinucleotide repeat containing 18)

Identity

Alias_symbol (synonym)CAGL79
TNRC18A
KIAA1856
Other alias
HGNC (Hugo) TNRC18
LocusID (NCBI) 84629
Atlas_Id 54717
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 5306792 and ends at 5423546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C6orf48 (6p21.33) / TNRC18 (7p22.1)EIF3D (22q12.3) / TNRC18 (7p22.1)ENO2 (12p13.31) / TNRC18 (7p22.1)
ERCC1 (19q13.32) / TNRC18 (7p22.1)IFI6 (1p36.11) / TNRC18 (7p22.1)IGDCC3 (15q22.31) / TNRC18 (7p22.1)
KMT2A (11q23.3) / TNRC18 (7p22.1)MAPK8IP3 (16p13.3) / TNRC18 (7p22.1)TNRC18 (7p22.1) / ADAP1 (7p22.3)
TNRC18 (7p22.1) / GLS (2q32.2)TNRC18 (7p22.1) / HMGN3 (6q14.1)TNRC18 (7p22.1) / RNF216 (7p22.1)
TNRC18 (7p22.1) / SLC9A3R1 (17q25.1)TNRC18 (7p22.1) / TGS1 (8q12.1)TNRC18 (7p22.1) / TNRC18 (7p22.1)
TNRC18 7p22.1 / RNF216 7p22.1TNRC18 7p22.1 / TGS1 8q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNRC18   11962
Cards
Entrez_Gene (NCBI)TNRC18  84629  trinucleotide repeat containing 18
AliasesCAGL79; TNRC18A
GeneCards (Weizmann)TNRC18
Ensembl hg19 (Hinxton)ENSG00000182095 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182095 [Gene_View]  chr7:5306792-5423546 [Contig_View]  TNRC18 [Vega]
ICGC DataPortalENSG00000182095
TCGA cBioPortalTNRC18
AceView (NCBI)TNRC18
Genatlas (Paris)TNRC18
WikiGenes84629
SOURCE (Princeton)TNRC18
Genetics Home Reference (NIH)TNRC18
Genomic and cartography
GoldenPath hg38 (UCSC)TNRC18  -     chr7:5306792-5423546 -  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNRC18  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblTNRC18 - 7p22.1 [CytoView hg19]  TNRC18 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBITNRC18 [Mapview hg19]  TNRC18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058759 AI567212 AI738451 AK027341 AY129022
RefSeq transcript (Entrez)NM_001013722 NM_001080495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNRC18
Cluster EST : UnigeneHs.520638 [ NCBI ]
CGAP (NCI)Hs.520638
Alternative Splicing GalleryENSG00000182095
Gene ExpressionTNRC18 [ NCBI-GEO ]   TNRC18 [ EBI - ARRAY_EXPRESS ]   TNRC18 [ SEEK ]   TNRC18 [ MEM ]
Gene Expression Viewer (FireBrowse)TNRC18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84629
GTEX Portal (Tissue expression)TNRC18
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15417   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15417  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15417
Splice isoforms : SwissVarO15417
PhosPhoSitePlusO15417
Domaine pattern : Prosite (Expaxy)BAH (PS51038)   
Domains : Interpro (EBI)BAH_dom   
Domain families : Pfam (Sanger)BAH (PF01426)   
Domain families : Pfam (NCBI)pfam01426   
Domain families : Smart (EMBL)BAH (SM00439)  
Conserved Domain (NCBI)TNRC18
DMDM Disease mutations84629
Blocks (Seattle)TNRC18
SuperfamilyO15417
Human Protein AtlasENSG00000182095
Peptide AtlasO15417
IPIIPI00872208   IPI00939914   IPI00914005   IPI00893161   IPI00892522   IPI01014202   IPI00894103   IPI00894018   IPI00894351   
Protein Interaction databases
DIP (DOE-UCLA)O15417
IntAct (EBI)O15417
FunCoupENSG00000182095
BioGRIDTNRC18
STRING (EMBL)TNRC18
ZODIACTNRC18
Ontologies - Pathways
QuickGOO15417
Ontology : AmiGOchromatin  transcription regulatory region sequence-specific DNA binding  chromatin binding  nucleus  chromatin silencing complex  mitochondrion  cytosol  chromatin silencing  heterochromatin assembly  nuclear membrane  
Ontology : EGO-EBIchromatin  transcription regulatory region sequence-specific DNA binding  chromatin binding  nucleus  chromatin silencing complex  mitochondrion  cytosol  chromatin silencing  heterochromatin assembly  nuclear membrane  
NDEx NetworkTNRC18
Atlas of Cancer Signalling NetworkTNRC18
Wikipedia pathwaysTNRC18
Orthology - Evolution
OrthoDB84629
GeneTree (enSembl)ENSG00000182095
Phylogenetic Trees/Animal Genes : TreeFamTNRC18
HOVERGENO15417
HOGENOMO15417
Homologs : HomoloGeneTNRC18
Homology/Alignments : Family Browser (UCSC)TNRC18
Gene fusions - Rearrangements
Fusion : MitelmanTNRC18/RNF216 [7p22.1/7p22.1]  
Fusion : MitelmanTNRC18/SLC9A3R1 [7p22.1/17q25.1]  [t(7;17)(p22;q25)]  
Fusion : MitelmanTNRC18/TGS1 [7p22.1/8q12.1]  [t(7;8)(p22;q12)]  
Fusion: TCGATNRC18 7p22.1 RNF216 7p22.1 BRCA LUAD
Fusion: TCGATNRC18 7p22.1 TGS1 8q12.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNRC18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNRC18
dbVarTNRC18
ClinVarTNRC18
1000_GenomesTNRC18 
Exome Variant ServerTNRC18
ExAC (Exome Aggregation Consortium)TNRC18 (select the gene name)
Genetic variants : HAPMAP84629
Genomic Variants (DGV)TNRC18 [DGVbeta]
DECIPHERTNRC18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNRC18 
Mutations
ICGC Data PortalTNRC18 
TCGA Data PortalTNRC18 
Broad Tumor PortalTNRC18
OASIS PortalTNRC18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTNRC18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTNRC18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNRC18
DgiDB (Drug Gene Interaction Database)TNRC18
DoCM (Curated mutations)TNRC18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNRC18 (select a term)
intoGenTNRC18
Cancer3DTNRC18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTNRC18
Genetic Testing Registry TNRC18
NextProtO15417 [Medical]
TSGene84629
GENETestsTNRC18
Target ValidationTNRC18
Huge Navigator TNRC18 [HugePedia]
snp3D : Map Gene to Disease84629
BioCentury BCIQTNRC18
ClinGenTNRC18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84629
Chemical/Pharm GKB GenePA36649
Clinical trialTNRC18
Miscellaneous
canSAR (ICR)TNRC18 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNRC18
EVEXTNRC18
GoPubMedTNRC18
iHOPTNRC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:35:47 CEST 2017

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