Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TNXA (tenascin XA (pseudogene))

Identity

Alias (NCBI)D6S103E
HXBL
TNX
XA
HGNC (Hugo) TNXA
HGNC Alias symbXA
D6S103E
HXBL
HGNC Previous nameTNX
HGNC Previous nametenascin XA
LocusID (NCBI) 7146
Atlas_Id 78064
Location 6p21.33  [Link to chromosome band 6p21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TNXA   11975
Cards
Entrez_Gene (NCBI)TNXA    tenascin XA (pseudogene)
AliasesD6S103E; HXBL; TNX; XA
GeneCards (Weizmann)TNXA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  TNXA [Vega]
TCGA cBioPortalTNXA
AceView (NCBI)TNXA
Genatlas (Paris)TNXA
SOURCE (Princeton)TNXA
Genetics Home Reference (NIH)TNXA
Genomic and cartography
GoldenPath hg38 (UCSC)TNXA  -  
GoldenPath hg19 (UCSC)TNXA  -  
GoldenPathTNXA - [CytoView hg19]  TNXA - [CytoView hg38]
Genome Data Viewer NCBITNXA [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BM906343
RefSeq transcript (Entrez)NM_007116
Consensus coding sequences : CCDS (NCBI)TNXA
Gene ExpressionTNXA [ NCBI-GEO ]   TNXA [ EBI - ARRAY_EXPRESS ]   TNXA [ SEEK ]   TNXA [ MEM ]
Gene Expression Viewer (FireBrowse)TNXA [ Firebrowse - Broad ]
GenevisibleExpression of TNXA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7146
GTEX Portal (Tissue expression)TNXA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16473   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16473  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16473
PhosPhoSitePlusQ16473
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_fold    TNX   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)TNXA
SuperfamilyQ16473
AlphaFold pdb e-kbQ16473   
Protein Interaction databases
DIP (DOE-UCLA)Q16473
IntAct (EBI)Q16473
BioGRIDTNXA
STRING (EMBL)TNXA
ZODIACTNXA
Ontologies - Pathways
QuickGOQ16473
Ontology : AmiGOmolecular_function  biological_process  collagen fibril organization  collagen-containing extracellular matrix  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  collagen fibril organization  collagen-containing extracellular matrix  extracellular exosome  
NDEx NetworkTNXA
Atlas of Cancer Signalling NetworkTNXA
Wikipedia pathwaysTNXA
Orthology - Evolution
OrthoDB7146
Phylogenetic Trees/Animal Genes : TreeFamTNXA
Homologs : HomoloGeneTNXA
Homology/Alignments : Family Browser (UCSC)TNXA
Gene fusions - Rearrangements
Fusion : QuiverTNXA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNXA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNXA
dbVarTNXA
ClinVarTNXA
MonarchTNXA
1000_GenomesTNXA 
Exome Variant ServerTNXA
Varsome BrowserTNXA
ACMGTNXA variants
VarityQ16473
Genomic Variants (DGV)TNXA [DGVbeta]
DECIPHERTNXA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNXA 
Mutations
ICGC Data PortalTNXA 
TCGA Data PortalTNXA 
Broad Tumor PortalTNXA
OASIS PortalTNXA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTNXA
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTNXA
DgiDB (Drug Gene Interaction Database)TNXA
DoCM (Curated mutations)TNXA
CIViC (Clinical Interpretations of Variants in Cancer)TNXA
Cancer3DTNXA
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTNXA
MedgenTNXA
Genetic Testing Registry TNXA
NextProtQ16473 [Medical]
GENETestsTNXA
Target ValidationTNXA
Huge Navigator TNXA [HugePedia]
ClinGenTNXA
Clinical trials, drugs, therapy
MyCancerGenomeTNXA
Protein Interactions : CTDTNXA
Pharm GKB GenePA36661
PharosQ16473
Clinical trialTNXA
Miscellaneous
canSAR (ICR)TNXA
HarmonizomeTNXA
DataMed IndexTNXA
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNXA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:30 CEST 2021

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