Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TNXA (tenascin XA (pseudogene))

Identity

Alias_namesTNX
tenascin XA
Alias_symbol (synonym)XA
D6S103E
HXBL
Other alias
HGNC (Hugo) TNXA
LocusID (NCBI) 7146
Atlas_Id 78064
Location 6p21.33  [Link to chromosome band 6p21]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TNXA   11975
Cards
Entrez_Gene (NCBI)TNXA  7146  tenascin XA (pseudogene)
AliasesD6S103E; HXBL; TNX; XA
GeneCards (Weizmann)TNXA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  TNXA [Vega]
TCGA cBioPortalTNXA
AceView (NCBI)TNXA
Genatlas (Paris)TNXA
WikiGenes7146
SOURCE (Princeton)TNXA
Genetics Home Reference (NIH)TNXA
Genomic and cartography
GoldenPath hg38 (UCSC)TNXA  -  
GoldenPath hg19 (UCSC)TNXA  -  
EnsemblTNXA - [CytoView hg19]  TNXA - [CytoView hg38]
Mapping of homologs : NCBITNXA [Mapview hg19]  TNXA [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM906343
RefSeq transcript (Entrez)NM_007116
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_167245 NT_167247 NT_167249
Consensus coding sequences : CCDS (NCBI)TNXA
Cluster EST : UnigeneHs.708061 [ NCBI ]
CGAP (NCI)Hs.708061
Gene ExpressionTNXA [ NCBI-GEO ]   TNXA [ EBI - ARRAY_EXPRESS ]   TNXA [ SEEK ]   TNXA [ MEM ]
Gene Expression Viewer (FireBrowse)TNXA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7146
GTEX Portal (Tissue expression)TNXA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16473   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16473  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16473
Splice isoforms : SwissVarQ16473
PhosPhoSitePlusQ16473
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold    TNX   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)TNXA
DMDM Disease mutations7146
Blocks (Seattle)TNXA
SuperfamilyQ16473
Peptide AtlasQ16473
IPIIPI00383520   
Protein Interaction databases
DIP (DOE-UCLA)Q16473
IntAct (EBI)Q16473
BioGRIDTNXA
STRING (EMBL)TNXA
ZODIACTNXA
Ontologies - Pathways
QuickGOQ16473
Ontology : AmiGOmolecular_function  proteinaceous extracellular matrix  biological_process  collagen fibril organization  extracellular exosome  
Ontology : EGO-EBImolecular_function  proteinaceous extracellular matrix  biological_process  collagen fibril organization  extracellular exosome  
NDEx NetworkTNXA
Atlas of Cancer Signalling NetworkTNXA
Wikipedia pathwaysTNXA
Orthology - Evolution
OrthoDB7146
Phylogenetic Trees/Animal Genes : TreeFamTNXA
HOVERGENQ16473
HOGENOMQ16473
Homologs : HomoloGeneTNXA
Homology/Alignments : Family Browser (UCSC)TNXA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTNXA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TNXA
dbVarTNXA
ClinVarTNXA
1000_GenomesTNXA 
Exome Variant ServerTNXA
ExAC (Exome Aggregation Consortium)TNXA (select the gene name)
Genetic variants : HAPMAP7146
Genomic Variants (DGV)TNXA [DGVbeta]
DECIPHERTNXA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTNXA 
Mutations
ICGC Data PortalTNXA 
TCGA Data PortalTNXA 
Broad Tumor PortalTNXA
OASIS PortalTNXA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTNXA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TNXA
DgiDB (Drug Gene Interaction Database)TNXA
DoCM (Curated mutations)TNXA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TNXA (select a term)
intoGenTNXA
Cancer3DTNXA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTNXA
Genetic Testing Registry TNXA
NextProtQ16473 [Medical]
TSGene7146
GENETestsTNXA
Huge Navigator TNXA [HugePedia]
snp3D : Map Gene to Disease7146
BioCentury BCIQTNXA
ClinGenTNXA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7146
Chemical/Pharm GKB GenePA36661
Clinical trialTNXA
Miscellaneous
canSAR (ICR)TNXA (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNXA
EVEXTNXA
GoPubMedTNXA
iHOPTNXA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:59:11 CEST 2017

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