Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TNXB (tenascin XB)

Identity

Alias (NCBI)EDS3
EDSCLL
EDSCLL1
HXBL
TENX
TN-X
TNX
TNXB1
TNXB2
TNXBS
VUR8
XB
XBS
HGNC (Hugo) TNXB
HGNC Alias symbTNXBS
XBS
XB
HGNC Previous nameTNXB1
 TNXB2
LocusID (NCBI) 7148
Atlas_Id 50052
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 32008420 and ends at 32013273 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL1A1 (17q21.33) / TNXB (6p21.33)SSU72 (1p36.33) / TNXB (6p21.33)TNXB (6p21.33) / ATF6B (6p21.33)
TNXB (6p21.33) / CMAHP (6p22.3)TNXB 6p21.33 / CMAHP 6p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TNXB   11976
Cards
Entrez_Gene (NCBI)TNXB    tenascin XB
AliasesEDS3; EDSCLL; EDSCLL1; HXBL; 
TENX; TN-X; TNX; TNXB1; TNXB2; TNXBS; VUR8; XB; XBS
GeneCards (Weizmann)TNXB
Ensembl hg19 (Hinxton)ENSG00000168477 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168477 [Gene_View]  ENSG00000168477 [Sequence]  chr6:32008420-32013273 [Contig_View]  TNXB [Vega]
ICGC DataPortalENSG00000168477
TCGA cBioPortalTNXB
AceView (NCBI)TNXB
Genatlas (Paris)TNXB
SOURCE (Princeton)TNXB
Genetics Home Reference (NIH)TNXB
Genomic and cartography
GoldenPath hg38 (UCSC)TNXB  -     chr6:32008420-32013273 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNXB  -     6p21.33   [Description]    (hg19-Feb_2009)
GoldenPathTNXB - 6p21.33 [CytoView hg19]  TNXB - 6p21.33 [CytoView hg38]
ImmunoBaseENSG00000168477
Genome Data Viewer NCBITNXB [Mapview hg19]  
OMIM600985   606408   615963   
Gene and transcription
Genbank (Entrez)AB209012 AK310080 AL044866 BC033740 BC071883
RefSeq transcript (Entrez)NM_001365276 NM_019105 NM_032470
Consensus coding sequences : CCDS (NCBI)TNXB
Gene ExpressionTNXB [ NCBI-GEO ]   TNXB [ EBI - ARRAY_EXPRESS ]   TNXB [ SEEK ]   TNXB [ MEM ]
Gene Expression Viewer (FireBrowse)TNXB [ Firebrowse - Broad ]
GenevisibleExpression of TNXB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7148
GTEX Portal (Tissue expression)TNXB
Human Protein AtlasENSG00000168477-TNXB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNXB
Human Protein Atlas [tissue]ENSG00000168477-TNXB [tissue]
HPRD02993
Protein Interaction databases
BioGRIDTNXB
STRING (EMBL)TNXB
ZODIACTNXB
Ontologies - Pathways
Litterature
PubMed95 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTNXB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:52 CEST 2021
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