Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TOB2 (transducer of ERBB2, 2)

Identity

Alias (NCBI)APRO5
TOB4
TOBL
TROB2
HGNC (Hugo) TOB2
HGNC Alias symbTOBL
TOB4
bK223H9
APRO5
HGNC Previous nameTROB2
LocusID (NCBI) 10766
Atlas_Id 42652
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41433494 and ends at 41446801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TOB2 (22q13.2) / ACO2 (22q13.2)TOB2 (22q13.2) / HNRNPAB (5q35.3)TOB2 (22q13.2) / SLC35D1 (1p31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)TOB2   11980
Cards
Entrez_Gene (NCBI)TOB2    transducer of ERBB2, 2
AliasesAPRO5; TOB4; TOBL; TROB2
GeneCards (Weizmann)TOB2
Ensembl hg19 (Hinxton)ENSG00000183864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183864 [Gene_View]  ENSG00000183864 [Sequence]  chr22:41433494-41446801 [Contig_View]  TOB2 [Vega]
ICGC DataPortalENSG00000183864
TCGA cBioPortalTOB2
AceView (NCBI)TOB2
Genatlas (Paris)TOB2
SOURCE (Princeton)TOB2
Genetics Home Reference (NIH)TOB2
Genomic and cartography
GoldenPath hg38 (UCSC)TOB2  -     chr22:41433494-41446801 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOB2  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathTOB2 - 22q13.2 [CytoView hg19]  TOB2 - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000183864
Genome Data Viewer NCBITOB2 [Mapview hg19]  
OMIM607396   
Gene and transcription
Genbank (Entrez)AB035207 AB051450 AI362988 AL133080 BC028919
RefSeq transcript (Entrez)NM_016272
Consensus coding sequences : CCDS (NCBI)TOB2
Gene ExpressionTOB2 [ NCBI-GEO ]   TOB2 [ EBI - ARRAY_EXPRESS ]   TOB2 [ SEEK ]   TOB2 [ MEM ]
Gene Expression Viewer (FireBrowse)TOB2 [ Firebrowse - Broad ]
GenevisibleExpression of TOB2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10766
GTEX Portal (Tissue expression)TOB2
Human Protein AtlasENSG00000183864-TOB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14106   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14106  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14106
PhosPhoSitePlusQ14106
Domaine pattern : Prosite (Expaxy)BTG_1 (PS00960)    BTG_2 (PS01203)   
Domains : Interpro (EBI)Anti_prolifrtn    Ataxin-2_C    BTG-like_sf    Tob1/2    Tob2   
Domain families : Pfam (Sanger)BTG (PF07742)    PAM2 (PF07145)   
Domain families : Pfam (NCBI)pfam07742    pfam07145   
Domain families : Smart (EMBL)btg1 (SM00099)  
Conserved Domain (NCBI)TOB2
SuperfamilyQ14106
AlphaFold pdb e-kbQ14106   
Human Protein Atlas [tissue]ENSG00000183864-TOB2 [tissue]
HPRD09583
Protein Interaction databases
DIP (DOE-UCLA)Q14106
IntAct (EBI)Q14106
BioGRIDTOB2
STRING (EMBL)TOB2
ZODIACTOB2
Ontologies - Pathways
QuickGOQ14106
Ontology : AmiGOtranscription corepressor activity  protein binding  nucleus  cytoplasm  cytosol  female gamete generation  negative regulation of cell population proliferation  regulation of gene expression  vitamin D receptor binding  negative regulation of osteoclast differentiation  positive regulation of ossification  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription corepressor activity  protein binding  nucleus  cytoplasm  cytosol  female gamete generation  negative regulation of cell population proliferation  regulation of gene expression  vitamin D receptor binding  negative regulation of osteoclast differentiation  positive regulation of ossification  negative regulation of transcription, DNA-templated  
Pathways : BIOCARTARole of Tob in T-cell activation [Genes]   
Pathways : KEGGRNA degradation   
NDEx NetworkTOB2
Atlas of Cancer Signalling NetworkTOB2
Wikipedia pathwaysTOB2
Orthology - Evolution
OrthoDB10766
GeneTree (enSembl)ENSG00000183864
Phylogenetic Trees/Animal Genes : TreeFamTOB2
Homologs : HomoloGeneTOB2
Homology/Alignments : Family Browser (UCSC)TOB2
Gene fusions - Rearrangements
Fusion : QuiverTOB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOB2
dbVarTOB2
ClinVarTOB2
MonarchTOB2
1000_GenomesTOB2 
Exome Variant ServerTOB2
GNOMAD BrowserENSG00000183864
Varsome BrowserTOB2
ACMGTOB2 variants
VarityQ14106
Genomic Variants (DGV)TOB2 [DGVbeta]
DECIPHERTOB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOB2 
Mutations
ICGC Data PortalTOB2 
TCGA Data PortalTOB2 
Broad Tumor PortalTOB2
OASIS PortalTOB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOB2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTOB2
Mutations and Diseases : HGMDTOB2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTOB2
DgiDB (Drug Gene Interaction Database)TOB2
DoCM (Curated mutations)TOB2
CIViC (Clinical Interpretations of Variants in Cancer)TOB2
Cancer3DTOB2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607396   
Orphanet
DisGeNETTOB2
MedgenTOB2
Genetic Testing Registry TOB2
NextProtQ14106 [Medical]
GENETestsTOB2
Target ValidationTOB2
Huge Navigator TOB2 [HugePedia]
ClinGenTOB2
Clinical trials, drugs, therapy
MyCancerGenomeTOB2
Protein Interactions : CTDTOB2
Pharm GKB GenePA36664
PharosQ14106
Clinical trialTOB2
Miscellaneous
canSAR (ICR)TOB2
HarmonizomeTOB2
DataMed IndexTOB2
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTOB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:52 CEST 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.