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TOE1 (target of EGR1, member 1 (nuclear))

Identity

Alias_symbol (synonym)hCaf1z
Other aliasPCH7
HGNC (Hugo) TOE1
LocusID (NCBI) 114034
Atlas_Id 75047
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45339670 and ends at 45343978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TOE1 (1p34.1) / TOE1 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOE1   15954
Cards
Entrez_Gene (NCBI)TOE1  114034  target of EGR1, member 1 (nuclear)
AliasesPCH7; hCaf1z
GeneCards (Weizmann)TOE1
Ensembl hg19 (Hinxton)ENSG00000132773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132773 [Gene_View]  chr1:45339670-45343978 [Contig_View]  TOE1 [Vega]
ICGC DataPortalENSG00000132773
TCGA cBioPortalTOE1
AceView (NCBI)TOE1
Genatlas (Paris)TOE1
WikiGenes114034
SOURCE (Princeton)TOE1
Genetics Home Reference (NIH)TOE1
Genomic and cartography
GoldenPath hg38 (UCSC)TOE1  -     chr1:45339670-45343978 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOE1  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblTOE1 - 1p34.1 [CytoView hg19]  TOE1 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBITOE1 [Mapview hg19]  TOE1 [Mapview hg38]
OMIM613931   614969   
Gene and transcription
Genbank (Entrez)AK024011 AK093320 AK293704 AK298162 AY169960
RefSeq transcript (Entrez)NM_025077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOE1
Cluster EST : UnigeneHs.525091 [ NCBI ]
CGAP (NCI)Hs.525091
Alternative Splicing GalleryENSG00000132773
Gene ExpressionTOE1 [ NCBI-GEO ]   TOE1 [ EBI - ARRAY_EXPRESS ]   TOE1 [ SEEK ]   TOE1 [ MEM ]
Gene Expression Viewer (FireBrowse)TOE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114034
GTEX Portal (Tissue expression)TOE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GM8
Splice isoforms : SwissVarQ96GM8
PhosPhoSitePlusQ96GM8
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)RNase_CAF1    RNaseH-like_dom    Znf_CCCH   
Domain families : Pfam (Sanger)CAF1 (PF04857)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam04857    pfam00642   
Conserved Domain (NCBI)TOE1
DMDM Disease mutations114034
Blocks (Seattle)TOE1
PDB (SRS)2FC6   
PDB (PDBSum)2FC6   
PDB (IMB)2FC6   
PDB (RSDB)2FC6   
Structural Biology KnowledgeBase2FC6   
SCOP (Structural Classification of Proteins)2FC6   
CATH (Classification of proteins structures)2FC6   
SuperfamilyQ96GM8
Human Protein AtlasENSG00000132773
Peptide AtlasQ96GM8
HPRD18212
IPIIPI00549516   IPI00942236   
Protein Interaction databases
DIP (DOE-UCLA)Q96GM8
IntAct (EBI)Q96GM8
FunCoupENSG00000132773
BioGRIDTOE1
STRING (EMBL)TOE1
ZODIACTOE1
Ontologies - Pathways
QuickGOQ96GM8
Ontology : AmiGO3'-5'-exoribonuclease activity  nucleic acid binding  poly(A)-specific ribonuclease activity  protein binding  nucleoplasm  nucleolus  cytoplasm  Cajal body  nuclear body  nuclear speck  metal ion binding  RNA phosphodiester bond hydrolysis, exonucleolytic  
Ontology : EGO-EBI3'-5'-exoribonuclease activity  nucleic acid binding  poly(A)-specific ribonuclease activity  protein binding  nucleoplasm  nucleolus  cytoplasm  Cajal body  nuclear body  nuclear speck  metal ion binding  RNA phosphodiester bond hydrolysis, exonucleolytic  
NDEx NetworkTOE1
Atlas of Cancer Signalling NetworkTOE1
Wikipedia pathwaysTOE1
Orthology - Evolution
OrthoDB114034
GeneTree (enSembl)ENSG00000132773
Phylogenetic Trees/Animal Genes : TreeFamTOE1
HOVERGENQ96GM8
HOGENOMQ96GM8
Homologs : HomoloGeneTOE1
Homology/Alignments : Family Browser (UCSC)TOE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOE1
dbVarTOE1
ClinVarTOE1
1000_GenomesTOE1 
Exome Variant ServerTOE1
ExAC (Exome Aggregation Consortium)TOE1 (select the gene name)
Genetic variants : HAPMAP114034
Genomic Variants (DGV)TOE1 [DGVbeta]
DECIPHERTOE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOE1 
Mutations
ICGC Data PortalTOE1 
TCGA Data PortalTOE1 
Broad Tumor PortalTOE1
OASIS PortalTOE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTOE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TOE1
DgiDB (Drug Gene Interaction Database)TOE1
DoCM (Curated mutations)TOE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOE1 (select a term)
intoGenTOE1
Cancer3DTOE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613931    614969   
Orphanet
MedgenTOE1
Genetic Testing Registry TOE1
NextProtQ96GM8 [Medical]
TSGene114034
GENETestsTOE1
Target ValidationTOE1
Huge Navigator TOE1 [HugePedia]
snp3D : Map Gene to Disease114034
BioCentury BCIQTOE1
ClinGenTOE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114034
Chemical/Pharm GKB GenePA38064
Clinical trialTOE1
Miscellaneous
canSAR (ICR)TOE1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOE1
EVEXTOE1
GoPubMedTOE1
iHOPTOE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:42 CEST 2017

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