Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TOGARAM1 (TOG array regulator of axonemal microtubules 1)

Identity

Alias (NCBI)FAM179B
JBTS37
KIAA0423
HGNC (Hugo) TOGARAM1
HGNC Alias symbCrescerin-1
crescerin
HGNC Alias namecrescerin
HGNC Previous nameKIAA0423
 FAM179B
HGNC Previous nameKIAA0423
 family with sequence similarity 179, member B
 family with sequence similarity 179 member B
LocusID (NCBI) 23116
Atlas_Id 80233
Location 14q21.2  [Link to chromosome band 14q21]
Location_base_pair Starts at 44962190 and ends at 45074431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TOGARAM1   19959
Cards
Entrez_Gene (NCBI)TOGARAM1    TOG array regulator of axonemal microtubules 1
AliasesFAM179B; JBTS37; KIAA0423
GeneCards (Weizmann)TOGARAM1
Ensembl hg19 (Hinxton)ENSG00000198718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198718 [Gene_View]  ENSG00000198718 [Sequence]  chr14:44962190-45074431 [Contig_View]  TOGARAM1 [Vega]
ICGC DataPortalENSG00000198718
TCGA cBioPortalTOGARAM1
AceView (NCBI)TOGARAM1
Genatlas (Paris)TOGARAM1
SOURCE (Princeton)TOGARAM1
Genetics Home Reference (NIH)TOGARAM1
Genomic and cartography
GoldenPath hg38 (UCSC)TOGARAM1  -     chr14:44962190-45074431 +  14q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOGARAM1  -     14q21.2   [Description]    (hg19-Feb_2009)
GoldenPathTOGARAM1 - 14q21.2 [CytoView hg19]  TOGARAM1 - 14q21.2 [CytoView hg38]
ImmunoBaseENSG00000198718
Genome Data Viewer NCBITOGARAM1 [Mapview hg19]  
OMIM617618   619185   
Gene and transcription
Genbank (Entrez)AA911186 AB007883 AK096934 AK295185 AK307722
RefSeq transcript (Entrez)NM_001308120 NM_015091
Consensus coding sequences : CCDS (NCBI)TOGARAM1
Gene ExpressionTOGARAM1 [ NCBI-GEO ]   TOGARAM1 [ EBI - ARRAY_EXPRESS ]   TOGARAM1 [ SEEK ]   TOGARAM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TOGARAM1 [ Firebrowse - Broad ]
GenevisibleExpression of TOGARAM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23116
GTEX Portal (Tissue expression)TOGARAM1
Human Protein AtlasENSG00000198718-TOGARAM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4F4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4F4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4F4
PhosPhoSitePlusQ9Y4F4
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Crescerin-1    TOG   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TOG (SM01349)  
Conserved Domain (NCBI)TOGARAM1
SuperfamilyQ9Y4F4
AlphaFold pdb e-kbQ9Y4F4   
Human Protein Atlas [tissue]ENSG00000198718-TOGARAM1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4F4
IntAct (EBI)Q9Y4F4
BioGRIDTOGARAM1
STRING (EMBL)TOGARAM1
ZODIACTOGARAM1
Ontologies - Pathways
QuickGOQ9Y4F4
Ontology : AmiGOmicrotubule cytoskeleton organization  microtubule organizing center  microtubule  spindle microtubule  cytoplasmic microtubule  cilium  cilium  microtubule binding  positive regulation of microtubule polymerization  axoneme assembly  ciliary basal body  mitotic spindle  mitotic spindle assembly  non-motile cilium assembly  
Ontology : EGO-EBImicrotubule cytoskeleton organization  microtubule organizing center  microtubule  spindle microtubule  cytoplasmic microtubule  cilium  cilium  microtubule binding  positive regulation of microtubule polymerization  axoneme assembly  ciliary basal body  mitotic spindle  mitotic spindle assembly  non-motile cilium assembly  
NDEx NetworkTOGARAM1
Atlas of Cancer Signalling NetworkTOGARAM1
Wikipedia pathwaysTOGARAM1
Orthology - Evolution
OrthoDB23116
GeneTree (enSembl)ENSG00000198718
Phylogenetic Trees/Animal Genes : TreeFamTOGARAM1
Homologs : HomoloGeneTOGARAM1
Homology/Alignments : Family Browser (UCSC)TOGARAM1
Gene fusions - Rearrangements
Fusion : QuiverTOGARAM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOGARAM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOGARAM1
dbVarTOGARAM1
ClinVarTOGARAM1
MonarchTOGARAM1
1000_GenomesTOGARAM1 
Exome Variant ServerTOGARAM1
GNOMAD BrowserENSG00000198718
Varsome BrowserTOGARAM1
ACMGTOGARAM1 variants
VarityQ9Y4F4
Genomic Variants (DGV)TOGARAM1 [DGVbeta]
DECIPHERTOGARAM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOGARAM1 
Mutations
ICGC Data PortalTOGARAM1 
TCGA Data PortalTOGARAM1 
Broad Tumor PortalTOGARAM1
OASIS PortalTOGARAM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOGARAM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTOGARAM1
Mutations and Diseases : HGMDTOGARAM1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTOGARAM1
DgiDB (Drug Gene Interaction Database)TOGARAM1
DoCM (Curated mutations)TOGARAM1
CIViC (Clinical Interpretations of Variants in Cancer)TOGARAM1
Cancer3DTOGARAM1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617618    619185   
Orphanet
DisGeNETTOGARAM1
MedgenTOGARAM1
Genetic Testing Registry TOGARAM1
NextProtQ9Y4F4 [Medical]
GENETestsTOGARAM1
Target ValidationTOGARAM1
Huge Navigator TOGARAM1 [HugePedia]
ClinGenTOGARAM1
Clinical trials, drugs, therapy
MyCancerGenomeTOGARAM1
Protein Interactions : CTDTOGARAM1
Pharm GKB GenePA162387516
PharosQ9Y4F4
Clinical trialTOGARAM1
Miscellaneous
canSAR (ICR)TOGARAM1
HarmonizomeTOGARAM1
DataMed IndexTOGARAM1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTOGARAM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:31 CEST 2021

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