Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TOGARAM1 (TOG array regulator of axonemal microtubules 1)

Identity

Alias_namesKIAA0423
FAM179B
KIAA0423
family with sequence similarity 179, member B
family with sequence similarity 179 member B
Alias_symbol (synonym)Crescerin-1
crescerin
Other alias
HGNC (Hugo) TOGARAM1
LocusID (NCBI) 23116
Atlas_Id 80233
Location 14q21.2  [Link to chromosome band 14q21]
Location_base_pair Starts at 44962190 and ends at 45074431 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOGARAM1   19959
Cards
Entrez_Gene (NCBI)TOGARAM1  23116  TOG array regulator of axonemal microtubules 1
AliasesFAM179B; KIAA0423
GeneCards (Weizmann)TOGARAM1
Ensembl hg19 (Hinxton)ENSG00000198718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198718 [Gene_View]  chr14:44962190-45074431 [Contig_View]  TOGARAM1 [Vega]
ICGC DataPortalENSG00000198718
TCGA cBioPortalTOGARAM1
AceView (NCBI)TOGARAM1
Genatlas (Paris)TOGARAM1
WikiGenes23116
SOURCE (Princeton)TOGARAM1
Genetics Home Reference (NIH)TOGARAM1
Genomic and cartography
GoldenPath hg38 (UCSC)TOGARAM1  -     chr14:44962190-45074431 +  14q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOGARAM1  -     14q21.2   [Description]    (hg19-Feb_2009)
EnsemblTOGARAM1 - 14q21.2 [CytoView hg19]  TOGARAM1 - 14q21.2 [CytoView hg38]
Mapping of homologs : NCBITOGARAM1 [Mapview hg19]  TOGARAM1 [Mapview hg38]
OMIM617618   
Gene and transcription
Genbank (Entrez)AA911186 AB007883 AK096934 AK295185 AK307722
RefSeq transcript (Entrez)NM_001308120 NM_015091
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOGARAM1
Cluster EST : UnigeneHs.371078 [ NCBI ]
CGAP (NCI)Hs.371078
Alternative Splicing GalleryENSG00000198718
Gene ExpressionTOGARAM1 [ NCBI-GEO ]   TOGARAM1 [ EBI - ARRAY_EXPRESS ]   TOGARAM1 [ SEEK ]   TOGARAM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TOGARAM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23116
GTEX Portal (Tissue expression)TOGARAM1
Human Protein AtlasENSG00000198718-TOGARAM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4F4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  SexprasSion]  [interaction]
NextProtQ9Y4F4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4F4
Splice isoforms : SwissVarQ9Y4F4
PhosPhoSitePlusQ9Y4F4
Domains : Interpro (EBI)ARM-like    ARM-type_fold    FAM179B    TOG   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TOG (SM01349)  
Conserved Domain (NCBI)TOGARAM1
DMDM Disease mutations23116
Blocks (Seattle)TOGARAM1
SuperfamilyQ9Y4F4
Human Protein Atlas [tissue]ENSG00000198718-TOGARAM1 [tissue]
Peptide AtlasQ9Y4F4
IPIIPI00744872   IPI00748234   IPI00439761   IPI01010012   IPI01026034   IPI01025909   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4F4
IntAct (EBI)Q9Y4F4
FunCoupENSG00000198718
BioGRIDTOGARAM1
STRING (EMBL)TOGARAM1
ZODIACTOGARAM1
Ontologies - Pathways
QuickGOQ9Y4F4
Ontology : AmiGOcytoplasm  microtubule  cilium  positive regulation of microtubule polymerization  axoneme assembly  ciliary basal body  non-motile cilium assembly  
Ontology : EGO-EBIcytoplasm  microtubule  cilium  positive regulation of microtubule polymerization  axoneme assembly  ciliary basal body  non-motile cilium assembly  
NDEx NetworkTOGARAM1
Atlas of Cancer Signalling NetworkTOGARAM1
Wikipedia pathwaysTOGARAM1
Orthology - Evolution
OrthoDB23116
GeneTree (enSembl)ENSG00000198718
Phylogenetic Trees/Animal Genes : TreeFamTOGARAM1
HOVERGENQ9Y4F4
HOGENOMQ9Y4F4
Homologs : HomoloGeneTOGARAM1
Homology/Alignments : Family Browser (UCSC)TOGARAM1
Gene fusions - Rearrangements
Tumor Fusion PortalTOGARAM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOGARAM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOGARAM1
dbVarTOGARAM1
ClinVarTOGARAM1
1000_GenomesTOGARAM1 
Exome Variant ServerTOGARAM1
ExAC (Exome Aggregation Consortium)ENSG00000198718
GNOMAD BrowserENSG00000198718
Genetic variants : HAPMAP23116
Genomic Variants (DGV)TOGARAM1 [DGVbeta]
DECIPHERTOGARAM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOGARAM1 
Mutations
ICGC Data PortalTOGARAM1 
TCGA Data PortalTOGARAM1 
Broad Tumor PortalTOGARAM1
OASIS PortalTOGARAM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTOGARAM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TOGARAM1
DgiDB (Drug Gene Interaction Database)TOGARAM1
DoCM (Curated mutations)TOGARAM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOGARAM1 (select a term)
intoGenTOGARAM1
Cancer3DTOGARAM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617618   
Orphanet
DisGeNETTOGARAM1
MedgenTOGARAM1
Genetic Testing Registry TOGARAM1
NextProtQ9Y4F4 [Medical]
TSGene23116
GENETestsTOGARAM1
Target ValidationTOGARAM1
Huge Navigator TOGARAM1 [HugePedia]
snp3D : Map Gene to Disease23116
BioCentury BCIQTOGARAM1
ClinGenTOGARAM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23116
Chemical/Pharm GKB GenePA162387516
Clinical trialTOGARAM1
Miscellaneous
canSAR (ICR)TOGARAM1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOGARAM1
EVEXTOGARAM1
GoPubMedTOGARAM1
iHOPTOGARAM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:45 CET 2017

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