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TOGARAM2 (TOG array regulator of axonemal microtubules 2)

Identity

Alias_namesFAM179A
family with sequence similarity 179, member A
family with sequence similarity 179 member A
Alias_symbol (synonym)FLJ43249
LOC165186
Crescerin-2
Other alias
HGNC (Hugo) TOGARAM2
LocusID (NCBI) 165186
Atlas_Id 79743
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 28981298 and ends at 29052230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOGARAM2   33715
Cards
Entrez_Gene (NCBI)TOGARAM2  165186  TOG array regulator of axonemal microtubules 2
AliasesFAM179A
GeneCards (Weizmann)TOGARAM2
Ensembl hg19 (Hinxton)ENSG00000189350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189350 [Gene_View]  chr2:28981298-29052230 [Contig_View]  TOGARAM2 [Vega]
ICGC DataPortalENSG00000189350
TCGA cBioPortalTOGARAM2
AceView (NCBI)TOGARAM2
Genatlas (Paris)TOGARAM2
WikiGenes165186
SOURCE (Princeton)TOGARAM2
Genetics Home Reference (NIH)TOGARAM2
Genomic and cartography
GoldenPath hg38 (UCSC)TOGARAM2  -     chr2:28981298-29052230 +  2p23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOGARAM2  -     2p23.2   [Description]    (hg19-Feb_2009)
EnsemblTOGARAM2 - 2p23.2 [CytoView hg19]  TOGARAM2 - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBITOGARAM2 [Mapview hg19]  TOGARAM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125239 AK125744 AK296977 BI768759 BQ772038
RefSeq transcript (Entrez)NM_001321538 NM_001321539 NM_199280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOGARAM2
Cluster EST : UnigeneHs.525977 [ NCBI ]
CGAP (NCI)Hs.525977
Alternative Splicing GalleryENSG00000189350
Gene ExpressionTOGARAM2 [ NCBI-GEO ]   TOGARAM2 [ EBI - ARRAY_EXPRESS ]   TOGARAM2 [ SEEK ]   TOGARAM2 [ MEM ]
Gene Expression Viewer (FireBrowse)TOGARAM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165186
GTEX Portal (Tissue expression)TOGARAM2
Human Protein AtlasENSG00000189350-TOGARAM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUX3
Splice isoforms : SwissVarQ6ZUX3
PhosPhoSitePlusQ6ZUX3
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CLASP_N_dom    TOG   
Domain families : Pfam (Sanger)CLASP_N (PF12348)   
Domain families : Pfam (NCBI)pfam12348   
Domain families : Smart (EMBL)TOG (SM01349)  
Conserved Domain (NCBI)TOGARAM2
DMDM Disease mutations165186
Blocks (Seattle)TOGARAM2
SuperfamilyQ6ZUX3
Human Protein Atlas [tissue]ENSG00000189350-TOGARAM2 [tissue]
Peptide AtlasQ6ZUX3
IPIIPI00445972   IPI00398169   IPI00888252   IPI00893638   IPI00894021   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUX3
IntAct (EBI)Q6ZUX3
FunCoupENSG00000189350
BioGRIDTOGARAM2
STRING (EMBL)TOGARAM2
ZODIACTOGARAM2
Ontologies - Pathways
QuickGOQ6ZUX3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTOGARAM2
Atlas of Cancer Signalling NetworkTOGARAM2
Wikipedia pathwaysTOGARAM2
Orthology - Evolution
OrthoDB165186
GeneTree (enSembl)ENSG00000189350
Phylogenetic Trees/Animal Genes : TreeFamTOGARAM2
HOVERGENQ6ZUX3
HOGENOMQ6ZUX3
Homologs : HomoloGeneTOGARAM2
Homology/Alignments : Family Browser (UCSC)TOGARAM2
Gene fusions - Rearrangements
Tumor Fusion PortalTOGARAM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOGARAM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOGARAM2
dbVarTOGARAM2
ClinVarTOGARAM2
1000_GenomesTOGARAM2 
Exome Variant ServerTOGARAM2
ExAC (Exome Aggregation Consortium)ENSG00000189350
GNOMAD BrowserENSG00000189350
Genetic variants : HAPMAP165186
Genomic Variants (DGV)TOGARAM2 [DGVbeta]
DECIPHERTOGARAM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOGARAM2 
Mutations
ICGC Data PortalTOGARAM2 
TCGA Data PortalTOGARAM2 
Broad Tumor PortalTOGARAM2
OASIS PortalTOGARAM2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTOGARAM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TOGARAM2
DgiDB (Drug Gene Interaction Database)TOGARAM2
DoCM (Curated mutations)TOGARAM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOGARAM2 (select a term)
intoGenTOGARAM2
Cancer3DTOGARAM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTOGARAM2
MedgenTOGARAM2
Genetic Testing Registry TOGARAM2
NextProtQ6ZUX3 [Medical]
TSGene165186
GENETestsTOGARAM2
Target ValidationTOGARAM2
Huge Navigator TOGARAM2 [HugePedia]
snp3D : Map Gene to Disease165186
BioCentury BCIQTOGARAM2
ClinGenTOGARAM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165186
Chemical/Pharm GKB GenePA162387471
Clinical trialTOGARAM2
Miscellaneous
canSAR (ICR)TOGARAM2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOGARAM2
EVEXTOGARAM2
GoPubMedTOGARAM2
iHOPTOGARAM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:41 CET 2017

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