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TOMM20 (translocase of outer mitochondrial membrane 20)

Identity

Alias (NCBI)MAS20
MOM19
TOM20
HGNC (Hugo) TOMM20
HGNC Alias symbKIAA0016
TOM20
MOM19
MAS20
HGNC Alias nametranslocase of outer mitochondrial membrane 20 homolog type II
HGNC Previous nametranslocase of outer mitochondrial membrane 20 homolog (yeast)
LocusID (NCBI) 9804
Atlas_Id 42655
Location 1q42.3  [Link to chromosome band 1q42]
Location_base_pair Starts at 235109343 and ends at 235128837 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC20A1 (2q13) / TOMM20 (1q42.3)TOMM20 (1q42.3) / SARNP (12q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TOMM20   20947
Cards
Entrez_Gene (NCBI)TOMM20  9804  translocase of outer mitochondrial membrane 20
AliasesMAS20; MOM19; TOM20
GeneCards (Weizmann)TOMM20
Ensembl hg19 (Hinxton)ENSG00000173726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173726 [Gene_View]  ENSG00000173726 [Sequence]  chr1:235109343-235128837 [Contig_View]  TOMM20 [Vega]
ICGC DataPortalENSG00000173726
TCGA cBioPortalTOMM20
AceView (NCBI)TOMM20
Genatlas (Paris)TOMM20
WikiGenes9804
SOURCE (Princeton)TOMM20
Genetics Home Reference (NIH)TOMM20
Genomic and cartography
GoldenPath hg38 (UCSC)TOMM20  -     chr1:235109343-235128837 -  1q42.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOMM20  -     1q42.3   [Description]    (hg19-Feb_2009)
GoldenPathTOMM20 - 1q42.3 [CytoView hg19]  TOMM20 - 1q42.3 [CytoView hg38]
ImmunoBaseENSG00000173726
genome Data Viewer NCBITOMM20 [Mapview hg19]  
OMIM601848   
Gene and transcription
Genbank (Entrez)AK289810 BC000882 BC009886 BC066335 BC071994
RefSeq transcript (Entrez)NM_014765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOMM20
Alternative Splicing GalleryENSG00000173726
Gene ExpressionTOMM20 [ NCBI-GEO ]   TOMM20 [ EBI - ARRAY_EXPRESS ]   TOMM20 [ SEEK ]   TOMM20 [ MEM ]
Gene Expression Viewer (FireBrowse)TOMM20 [ Firebrowse - Broad ]
GenevisibleExpression of TOMM20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9804
GTEX Portal (Tissue expression)TOMM20
Human Protein AtlasENSG00000173726-TOMM20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15388   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15388  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15388
Splice isoforms : SwissVarQ15388
PhosPhoSitePlusQ15388
Domains : Interpro (EBI)MAS20    MAS20_rcpt_metazoan    Tom20_dom_sf   
Domain families : Pfam (Sanger)MAS20 (PF02064)   
Domain families : Pfam (NCBI)pfam02064   
Conserved Domain (NCBI)TOMM20
DMDM Disease mutations9804
Blocks (Seattle)TOMM20
PDB (RSDB)4APO   
PDB Europe4APO   
PDB (PDBSum)4APO   
PDB (IMB)4APO   
Structural Biology KnowledgeBase4APO   
SCOP (Structural Classification of Proteins)4APO   
CATH (Classification of proteins structures)4APO   
SuperfamilyQ15388
Human Protein Atlas [tissue]ENSG00000173726-TOMM20 [tissue]
Peptide AtlasQ15388
HPRD03507
IPIIPI00016676   
Protein Interaction databases
DIP (DOE-UCLA)Q15388
IntAct (EBI)Q15388
FunCoupENSG00000173726
BioGRIDTOMM20
STRING (EMBL)TOMM20
ZODIACTOMM20
Ontologies - Pathways
QuickGOQ15388
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  response to muscle activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  tRNA import into mitochondrion  macroautophagy  protein deubiquitination  protein import into mitochondrial matrix  mitochondrion targeting sequence binding  integral component of mitochondrial outer membrane  Mitochondria-associated ER Membrane  unfolded protein binding  mitochondrial outer membrane translocase complex assembly  response to 3,3',5-triiodo-L-thyronine  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  response to muscle activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  tRNA import into mitochondrion  macroautophagy  protein deubiquitination  protein import into mitochondrial matrix  mitochondrion targeting sequence binding  integral component of mitochondrial outer membrane  Mitochondria-associated ER Membrane  unfolded protein binding  mitochondrial outer membrane translocase complex assembly  response to 3,3',5-triiodo-L-thyronine  
NDEx NetworkTOMM20
Atlas of Cancer Signalling NetworkTOMM20
Wikipedia pathwaysTOMM20
Orthology - Evolution
OrthoDB9804
GeneTree (enSembl)ENSG00000173726
Phylogenetic Trees/Animal Genes : TreeFamTOMM20
HOGENOMQ15388
Homologs : HomoloGeneTOMM20
Homology/Alignments : Family Browser (UCSC)TOMM20
Gene fusions - Rearrangements
Fusion : QuiverTOMM20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOMM20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOMM20
dbVarTOMM20
ClinVarTOMM20
MonarchTOMM20
1000_GenomesTOMM20 
Exome Variant ServerTOMM20
GNOMAD BrowserENSG00000173726
Varsome BrowserTOMM20
Genetic variants : HAPMAP9804
Genomic Variants (DGV)TOMM20 [DGVbeta]
DECIPHERTOMM20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOMM20 
Mutations
ICGC Data PortalTOMM20 
TCGA Data PortalTOMM20 
Broad Tumor PortalTOMM20
OASIS PortalTOMM20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOMM20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTOMM20
Mutations and Diseases : HGMDTOMM20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TOMM20
DgiDB (Drug Gene Interaction Database)TOMM20
DoCM (Curated mutations)TOMM20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOMM20 (select a term)
intoGenTOMM20
Cancer3DTOMM20(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601848   
Orphanet
DisGeNETTOMM20
MedgenTOMM20
Genetic Testing Registry TOMM20
NextProtQ15388 [Medical]
TSGene9804
GENETestsTOMM20
Target ValidationTOMM20
Huge Navigator TOMM20 [HugePedia]
snp3D : Map Gene to Disease9804
BioCentury BCIQTOMM20
ClinGenTOMM20
Clinical trials, drugs, therapy
Protein Interactions : CTD9804
Pharm GKB GenePA134964372
Clinical trialTOMM20
Miscellaneous
canSAR (ICR)TOMM20 (select the gene name)
HarmonizomeTOMM20
DataMed IndexTOMM20
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOMM20
EVEXTOMM20
GoPubMedTOMM20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:36:48 CEST 2020

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