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TOMM20 (translocase of outer mitochondrial membrane 20 homolog (yeast))

Identity

Other namesMAS20
MOM19
TOM20
HGNC (Hugo) TOMM20
LocusID (NCBI) 9804
Location 1q42.3
Location_base_pair Starts at 235272658 and ends at 235292256 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TOMM20   20947
Cards
Entrez_Gene (NCBI)TOMM20  9804  translocase of outer mitochondrial membrane 20 homolog (yeast)
GeneCards (Weizmann)TOMM20
Ensembl hg19 (Hinxton)ENSG00000173726 [Gene_View]  chr1:235272658-235292256 [Contig_View]  TOMM20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173726 [Gene_View]  chr1:235272658-235292256 [Contig_View]  TOMM20 [Vega]
ICGC DataPortalENSG00000173726
cBioPortalTOMM20
AceView (NCBI)TOMM20
Genatlas (Paris)TOMM20
WikiGenes9804
SOURCE (Princeton)TOMM20
Genomic and cartography
GoldenPath hg19 (UCSC)TOMM20  -     chr1:235272658-235292256 -  1q42.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TOMM20  -     1q42.3   [Description]    (hg38-Dec_2013)
EnsemblTOMM20 - 1q42.3 [CytoView hg19]  TOMM20 - 1q42.3 [CytoView hg38]
Mapping of homologs : NCBITOMM20 [Mapview hg19]  TOMM20 [Mapview hg38]
OMIM601848   
Gene and transcription
Genbank (Entrez)AK289810 BC000882 BC009886 BC066335 BC071994
RefSeq transcript (Entrez)NM_014765
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_167186 NW_001838549 NW_004929294
Consensus coding sequences : CCDS (NCBI)TOMM20
Cluster EST : UnigeneHs.533192 [ NCBI ]
CGAP (NCI)Hs.533192
Alternative Splicing : Fast-db (Paris)GSHG0003060
Alternative Splicing GalleryENSG00000173726
Gene ExpressionTOMM20 [ NCBI-GEO ]     TOMM20 [ SEEK ]   TOMM20 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15388 (Uniprot)
NextProtQ15388  [Medical]
With graphics : InterProQ15388
Splice isoforms : SwissVarQ15388 (Swissvar)
Domains : Interpro (EBI)MAS20_rcpt-related    MAS20_rcpt_metazoan    Tom20_dom   
Related proteins : CluSTrQ15388
Domain families : Pfam (Sanger)MAS20 (PF02064)   
Domain families : Pfam (NCBI)pfam02064   
DMDM Disease mutations9804
Blocks (Seattle)Q15388
PDB (SRS)4APO   
PDB (PDBSum)4APO   
PDB (IMB)4APO   
PDB (RSDB)4APO   
Human Protein AtlasENSG00000173726
Peptide AtlasQ15388
HPRD03507
IPIIPI00016676   
Protein Interaction databases
DIP (DOE-UCLA)Q15388
IntAct (EBI)Q15388
FunCoupENSG00000173726
BioGRIDTOMM20
IntegromeDBTOMM20
STRING (EMBL)TOMM20
Ontologies - Pathways
QuickGOQ15388
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  protein targeting to mitochondrion  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  integral component of membrane  cellular protein metabolic process  unfolded protein binding  protein transmembrane transport  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  protein targeting to mitochondrion  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  integral component of membrane  cellular protein metabolic process  unfolded protein binding  protein transmembrane transport  
Protein Interaction DatabaseTOMM20
DoCM (Curated mutations)TOMM20
Wikipedia pathwaysTOMM20
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTOMM20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOMM20
dbVarTOMM20
ClinVarTOMM20
1000_GenomesTOMM20 
Exome Variant ServerTOMM20
SNP (GeneSNP Utah)TOMM20
SNP : HGBaseTOMM20
Genetic variants : HAPMAPTOMM20
Genomic VariantsTOMM20  TOMM20 [DGVbeta]
Mutations
ICGC Data PortalENSG00000173726 
Somatic Mutations in Cancer : COSMICTOMM20 
CONAN: Copy Number AnalysisTOMM20 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:235272658-235292256
Mutations and Diseases : HGMDTOMM20
OMIM601848   
MedgenTOMM20
NextProtQ15388 [Medical]
GENETestsTOMM20
Disease Genetic AssociationTOMM20
Huge Navigator TOMM20 [HugePedia]  TOMM20 [HugeCancerGEM]
snp3D : Map Gene to Disease9804
DGIdb (Drug Gene Interaction db)TOMM20
General knowledge
Homologs : HomoloGeneTOMM20
Homology/Alignments : Family Browser (UCSC)TOMM20
Phylogenetic Trees/Animal Genes : TreeFamTOMM20
Chemical/Protein Interactions : CTD9804
Chemical/Pharm GKB GenePA134964372
Clinical trialTOMM20
Cancer Resource (Charite)ENSG00000173726
Other databases
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
CoreMineTOMM20
GoPubMedTOMM20
iHOPTOMM20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 02:01:50 CET 2014

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