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TOMM20 (translocase of outer mitochondrial membrane 20 homolog (yeast))

Identity

Other namesMAS20
MOM19
TOM20
HGNC (Hugo) TOMM20
LocusID (NCBI) 9804
Atlas_Id 42655
Location 1q42.3
Location_base_pair Starts at 235272658 and ends at 235292256 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOMM20   20947
Cards
Entrez_Gene (NCBI)TOMM20  9804  translocase of outer mitochondrial membrane 20 homolog (yeast)
GeneCards (Weizmann)TOMM20
Ensembl hg19 (Hinxton)ENSG00000173726 [Gene_View]  chr1:235272658-235292256 [Contig_View]  TOMM20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173726 [Gene_View]  chr1:235272658-235292256 [Contig_View]  TOMM20 [Vega]
ICGC DataPortalENSG00000173726
TCGA cBioPortalTOMM20
AceView (NCBI)TOMM20
Genatlas (Paris)TOMM20
WikiGenes9804
SOURCE (Princeton)TOMM20
Genomic and cartography
GoldenPath hg19 (UCSC)TOMM20  -     chr1:235272658-235292256 -  1q42.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TOMM20  -     1q42.3   [Description]    (hg38-Dec_2013)
EnsemblTOMM20 - 1q42.3 [CytoView hg19]  TOMM20 - 1q42.3 [CytoView hg38]
Mapping of homologs : NCBITOMM20 [Mapview hg19]  TOMM20 [Mapview hg38]
OMIM601848   
Gene and transcription
Genbank (Entrez)AK289810 BC000882 BC009886 BC066335 BC071994
RefSeq transcript (Entrez)NM_014765
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)TOMM20
Cluster EST : UnigeneHs.533192 [ NCBI ]
CGAP (NCI)Hs.533192
Alternative Splicing : Fast-db (Paris)GSHG0003060
Alternative Splicing GalleryENSG00000173726
Gene ExpressionTOMM20 [ NCBI-GEO ]     TOMM20 [ SEEK ]   TOMM20 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9804
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15388 (Uniprot)
NextProtQ15388  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15388
Splice isoforms : SwissVarQ15388 (Swissvar)
PhosPhoSitePlusQ15388
Domains : Interpro (EBI)MAS20    MAS20_rcpt_metazoan    Tom20_dom   
Domain families : Pfam (Sanger)MAS20 (PF02064)   
Domain families : Pfam (NCBI)pfam02064   
DMDM Disease mutations9804
Blocks (Seattle)TOMM20
PDB (SRS)4APO   
PDB (PDBSum)4APO   
PDB (IMB)4APO   
PDB (RSDB)4APO   
Structural Biology KnowledgeBase4APO   
SCOP (Structural Classification of Proteins)4APO   
CATH (Classification of proteins structures)4APO   
Human Protein AtlasENSG00000173726
Peptide AtlasQ15388
HPRD03507
IPIIPI00016676   
Protein Interaction databases
DIP (DOE-UCLA)Q15388
IntAct (EBI)Q15388
FunCoupENSG00000173726
BioGRIDTOMM20
IntegromeDBTOMM20
STRING (EMBL)TOMM20
ZODIACTOMM20
Ontologies - Pathways
QuickGOQ15388
Ontology : AmiGOmacromitophagy  protein binding  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  protein targeting to mitochondrion  protein channel activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  tRNA import into mitochondrion  macroautophagy  protein import into mitochondrial matrix  mitochondrion targeting sequence binding  integral component of mitochondrial outer membrane  ER-mitochondrion membrane contact site  cellular protein metabolic process  unfolded protein binding  mitochondrial outer membrane translocase complex assembly  
Ontology : EGO-EBImacromitophagy  protein binding  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  protein targeting to mitochondrion  protein channel activity  P-P-bond-hydrolysis-driven protein transmembrane transporter activity  tRNA import into mitochondrion  macroautophagy  protein import into mitochondrial matrix  mitochondrion targeting sequence binding  integral component of mitochondrial outer membrane  ER-mitochondrion membrane contact site  cellular protein metabolic process  unfolded protein binding  mitochondrial outer membrane translocase complex assembly  
Protein Interaction DatabaseTOMM20
Atlas of Cancer Signalling NetworkTOMM20
Wikipedia pathwaysTOMM20
Orthology - Evolution
OrthoDB9804
GeneTree (enSembl)ENSG00000173726
Phylogenetic Trees/Animal Genes : TreeFamTOMM20
Homologs : HomoloGeneTOMM20
Homology/Alignments : Family Browser (UCSC)TOMM20
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTOMM20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOMM20
dbVarTOMM20
ClinVarTOMM20
1000_GenomesTOMM20 
Exome Variant ServerTOMM20
Exome Aggregation Consortium (ExAC)ENSG00000173726
SNP (GeneSNP Utah)TOMM20
SNP : HGBaseTOMM20
Genetic variants : HAPMAPTOMM20
Genomic Variants (DGV)TOMM20 [DGVbeta]
Mutations
ICGC Data PortalTOMM20 
TCGA Data PortalTOMM20 
Tumor PortalTOMM20
TCGA Copy Number PortalTOMM20
Somatic Mutations in Cancer : COSMICTOMM20 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TOMM20
DgiDB (Drug Gene Interaction Database)TOMM20
DoCM (Curated mutations)TOMM20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOMM20 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:235272658-235292256
CONAN: Copy Number AnalysisTOMM20 
Mutations and Diseases : HGMDTOMM20
OMIM601848   
MedgenTOMM20
NextProtQ15388 [Medical]
TSGene9804
GENETestsTOMM20
Huge Navigator TOMM20 [HugePedia]  TOMM20 [HugeCancerGEM]
snp3D : Map Gene to Disease9804
BioCentury BCIQTOMM20
General knowledge
Chemical/Protein Interactions : CTD9804
Chemical/Pharm GKB GenePA134964372
Clinical trialTOMM20
Other databases
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOMM20
GoPubMedTOMM20
iHOPTOMM20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:39:32 CET 2016

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