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TOMM40L (translocase of outer mitochondrial membrane 40 homolog (yeast)-like)

Identity

Alias_namestranslocase of outer mitochondrial membrane 40 homolog-like (yeast)
translocase of outer mitochondrial membrane 40 homolog (yeast)-like
Alias_symbol (synonym)FLJ12770
TOMM40B
Other alias
HGNC (Hugo) TOMM40L
LocusID (NCBI) 84134
Atlas_Id 75052
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161195729 and ends at 161200536 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TOMM40L (1q23.3) / ARPC1A (7q22.1)TSIX (Xq13.2) / TOMM40L (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOMM40L   25756
Cards
Entrez_Gene (NCBI)TOMM40L  84134  translocase of outer mitochondrial membrane 40 homolog (yeast)-like
AliasesTOMM40B
GeneCards (Weizmann)TOMM40L
Ensembl hg19 (Hinxton)ENSG00000158882 [Gene_View]  chr1:161195729-161200536 [Contig_View]  TOMM40L [Vega]
Ensembl hg38 (Hinxton)ENSG00000158882 [Gene_View]  chr1:161195729-161200536 [Contig_View]  TOMM40L [Vega]
ICGC DataPortalENSG00000158882
TCGA cBioPortalTOMM40L
AceView (NCBI)TOMM40L
Genatlas (Paris)TOMM40L
WikiGenes84134
SOURCE (Princeton)TOMM40L
Genetics Home Reference (NIH)TOMM40L
Genomic and cartography
GoldenPath hg19 (UCSC)TOMM40L  -     chr1:161195729-161200536 +  1q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TOMM40L  -     1q23.3   [Description]    (hg38-Dec_2013)
EnsemblTOMM40L - 1q23.3 [CytoView hg19]  TOMM40L - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBITOMM40L [Mapview hg19]  TOMM40L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022832 AK027704 AK297831 AK297848 AL523459
RefSeq transcript (Entrez)NM_001286373 NM_001286374 NM_032174
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)TOMM40L
Cluster EST : UnigeneHs.321653 [ NCBI ]
CGAP (NCI)Hs.321653
Alternative Splicing GalleryENSG00000158882
Gene ExpressionTOMM40L [ NCBI-GEO ]   TOMM40L [ EBI - ARRAY_EXPRESS ]   TOMM40L [ SEEK ]   TOMM40L [ MEM ]
Gene Expression Viewer (FireBrowse)TOMM40L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84134
GTEX Portal (Tissue expression)TOMM40L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969M1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969M1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969M1
Splice isoforms : SwissVarQ969M1
PhosPhoSitePlusQ969M1
Domains : Interpro (EBI)Porin_dom    Porin_Euk/Tom40   
Domain families : Pfam (Sanger)Porin_3 (PF01459)   
Domain families : Pfam (NCBI)pfam01459   
Conserved Domain (NCBI)TOMM40L
DMDM Disease mutations84134
Blocks (Seattle)TOMM40L
SuperfamilyQ969M1
Human Protein AtlasENSG00000158882
Peptide AtlasQ969M1
HPRD13354
IPIIPI00152938   IPI01010431   IPI00922869   
Protein Interaction databases
DIP (DOE-UCLA)Q969M1
IntAct (EBI)Q969M1
FunCoupENSG00000158882
BioGRIDTOMM40L
STRING (EMBL)TOMM40L
ZODIACTOMM40L
Ontologies - Pathways
QuickGOQ969M1
Ontology : AmiGOmolecular_function  mitochondrial outer membrane  ion transport  biological_process  protein transport  porin activity  protein complex  pore complex  transmembrane transport  
Ontology : EGO-EBImolecular_function  mitochondrial outer membrane  ion transport  biological_process  protein transport  porin activity  protein complex  pore complex  transmembrane transport  
Pathways : KEGGAmyotrophic lateral sclerosis (ALS)   
NDEx NetworkTOMM40L
Atlas of Cancer Signalling NetworkTOMM40L
Wikipedia pathwaysTOMM40L
Orthology - Evolution
OrthoDB84134
GeneTree (enSembl)ENSG00000158882
Phylogenetic Trees/Animal Genes : TreeFamTOMM40L
HOVERGENQ969M1
HOGENOMQ969M1
Homologs : HomoloGeneTOMM40L
Homology/Alignments : Family Browser (UCSC)TOMM40L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOMM40L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOMM40L
dbVarTOMM40L
ClinVarTOMM40L
1000_GenomesTOMM40L 
Exome Variant ServerTOMM40L
ExAC (Exome Aggregation Consortium)TOMM40L (select the gene name)
Genetic variants : HAPMAP84134
Genomic Variants (DGV)TOMM40L [DGVbeta]
DECIPHER (Syndromes)1:161195729-161200536  ENSG00000158882
CONAN: Copy Number AnalysisTOMM40L 
Mutations
ICGC Data PortalTOMM40L 
TCGA Data PortalTOMM40L 
Broad Tumor PortalTOMM40L
OASIS PortalTOMM40L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOMM40L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTOMM40L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TOMM40L
DgiDB (Drug Gene Interaction Database)TOMM40L
DoCM (Curated mutations)TOMM40L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOMM40L (select a term)
intoGenTOMM40L
Cancer3DTOMM40L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTOMM40L
Genetic Testing Registry TOMM40L
NextProtQ969M1 [Medical]
TSGene84134
GENETestsTOMM40L
Huge Navigator TOMM40L [HugePedia]
snp3D : Map Gene to Disease84134
BioCentury BCIQTOMM40L
ClinGenTOMM40L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84134
Chemical/Pharm GKB GenePA142670714
Clinical trialTOMM40L
Miscellaneous
canSAR (ICR)TOMM40L (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOMM40L
EVEXTOMM40L
GoPubMedTOMM40L
iHOPTOMM40L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:19 CET 2017

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