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TOMM5 (translocase of outer mitochondrial membrane 5)

Identity

Alias_namesC9orf105
chromosome 9 open reading frame 105
translocase of outer mitochondrial membrane 5 homolog (yeast)
Alias_symbol (synonym)bA613M10.3
Tom5
Other alias
HGNC (Hugo) TOMM5
LocusID (NCBI)
Atlas_Id 75053
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 37588415 and ends at 37592639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOMM5   31369
Cards
Entrez_Gene (NCBI)TOMM5  401505  translocase of outer mitochondrial membrane 5
AliasesC9orf105; Tom5; bA613M10.3
GeneCards (Weizmann)TOMM5
Ensembl hg19 (Hinxton)ENSG00000175768 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175768 [Gene_View]  chr9:37588415-37592639 [Contig_View]  TOMM5 [Vega]
ICGC DataPortalENSG00000175768
TCGA cBioPortalTOMM5
AceView (NCBI)TOMM5
Genatlas (Paris)TOMM5
WikiGenes401505
SOURCE (Princeton)TOMM5
Genetics Home Reference (NIH)TOMM5
Genomic and cartography
GoldenPath hg38 (UCSC)TOMM5  -     chr9:37588415-37592639 -  9p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOMM5  -     9p13.2   [Description]    (hg19-Feb_2009)
EnsemblTOMM5 - 9p13.2 [CytoView hg19]  TOMM5 - 9p13.2 [CytoView hg38]
Mapping of homologs : NCBITOMM5 [Mapview hg19]  TOMM5 [Mapview hg38]
OMIM616169   
Gene and transcription
Genbank (Entrez)AB435233 BC029423 BC034247 BM693831 CR627326
RefSeq transcript (Entrez)NM_001001790 NM_001134484 NM_001134485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOMM5
Cluster EST : UnigeneHs.130774 [ NCBI ]
CGAP (NCI)Hs.130774
Alternative Splicing GalleryENSG00000175768
Gene ExpressionTOMM5 [ NCBI-GEO ]   TOMM5 [ EBI - ARRAY_EXPRESS ]   TOMM5 [ SEEK ]   TOMM5 [ MEM ]
Gene Expression Viewer (FireBrowse)TOMM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401505
GTEX Portal (Tissue expression)TOMM5
Human Protein AtlasENSG00000175768-TOMM5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4H5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4H5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4H5
Splice isoforms : SwissVarQ8N4H5
PhosPhoSitePlusQ8N4H5
Domains : Interpro (EBI)TOMM5   
Domain families : Pfam (Sanger)TOM_sub5 (PF15178)   
Domain families : Pfam (NCBI)pfam15178   
Conserved Domain (NCBI)TOMM5
DMDM Disease mutations401505
Blocks (Seattle)TOMM5
SuperfamilyQ8N4H5
Human Protein Atlas [tissue]ENSG00000175768-TOMM5 [tissue]
Peptide AtlasQ8N4H5
HPRD16672
IPIIPI00166704   IPI00552228   IPI01009544   IPI01012666   IPI00908537   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4H5
IntAct (EBI)Q8N4H5
FunCoupENSG00000175768
BioGRIDTOMM5
STRING (EMBL)TOMM5
ZODIACTOMM5
Ontologies - Pathways
QuickGOQ8N4H5
Ontology : AmiGOmitochondrion  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  protein transporter activity  integral component of membrane  macroautophagy  
Ontology : EGO-EBImitochondrion  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  protein targeting to mitochondrion  protein transporter activity  integral component of membrane  macroautophagy  
NDEx NetworkTOMM5
Atlas of Cancer Signalling NetworkTOMM5
Wikipedia pathwaysTOMM5
Orthology - Evolution
OrthoDB401505
GeneTree (enSembl)ENSG00000175768
Phylogenetic Trees/Animal Genes : TreeFamTOMM5
HOVERGENQ8N4H5
HOGENOMQ8N4H5
Homologs : HomoloGeneTOMM5
Homology/Alignments : Family Browser (UCSC)TOMM5
Gene fusions - Rearrangements
Fusion: Tumor Portal TOMM5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOMM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOMM5
dbVarTOMM5
ClinVarTOMM5
1000_GenomesTOMM5 
Exome Variant ServerTOMM5
ExAC (Exome Aggregation Consortium)ENSG00000175768
GNOMAD BrowserENSG00000175768
Genetic variants : HAPMAP401505
Genomic Variants (DGV)TOMM5 [DGVbeta]
DECIPHERTOMM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOMM5 
Mutations
ICGC Data PortalTOMM5 
TCGA Data PortalTOMM5 
Broad Tumor PortalTOMM5
OASIS PortalTOMM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOMM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTOMM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TOMM5
DgiDB (Drug Gene Interaction Database)TOMM5
DoCM (Curated mutations)TOMM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOMM5 (select a term)
intoGenTOMM5
Cancer3DTOMM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616169   
Orphanet
MedgenTOMM5
Genetic Testing Registry TOMM5
NextProtQ8N4H5 [Medical]
TSGene401505
GENETestsTOMM5
Target ValidationTOMM5
Huge Navigator TOMM5 [HugePedia]
snp3D : Map Gene to Disease401505
BioCentury BCIQTOMM5
ClinGenTOMM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401505
Chemical/Pharm GKB GenePA164726670
Clinical trialTOMM5
Miscellaneous
canSAR (ICR)TOMM5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOMM5
EVEXTOMM5
GoPubMedTOMM5
iHOPTOMM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:33:34 CET 2017

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