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TOMM6 (translocase of outer mitochondrial membrane 6)

Identity

Alias_namestranslocase of outer mitochondrial membrane 6 homolog (yeast)
Alias_symbol (synonym)OBTP
Tom6
Other aliasTOM6
HGNC (Hugo) TOMM6
LocusID (NCBI) 100188893
Atlas_Id 75054
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 41787443 and ends at 41789896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOMM6   34528
Cards
Entrez_Gene (NCBI)TOMM6  100188893  translocase of outer mitochondrial membrane 6
AliasesOBTP; TOM6
GeneCards (Weizmann)TOMM6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:41787443-41789896 [Contig_View]  TOMM6 [Vega]
TCGA cBioPortalTOMM6
AceView (NCBI)TOMM6
Genatlas (Paris)TOMM6
WikiGenes100188893
SOURCE (Princeton)TOMM6
Genetics Home Reference (NIH)TOMM6
Genomic and cartography
GoldenPath hg38 (UCSC)TOMM6  -     chr6:41787443-41789896 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOMM6  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblTOMM6 - 6p21.1 [CytoView hg19]  TOMM6 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBITOMM6 [Mapview hg19]  TOMM6 [Mapview hg38]
OMIM616168   
Gene and transcription
Genbank (Entrez)AB435319 AF216754 AJ420506 BC015975 BC018624
RefSeq transcript (Entrez)NM_001134493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOMM6
Cluster EST : UnigeneHs.731633 [ NCBI ]
CGAP (NCI)Hs.731633
Gene ExpressionTOMM6 [ NCBI-GEO ]   TOMM6 [ EBI - ARRAY_EXPRESS ]   TOMM6 [ SEEK ]   TOMM6 [ MEM ]
Gene Expression Viewer (FireBrowse)TOMM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100188893
GTEX Portal (Tissue expression)TOMM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B49
Splice isoforms : SwissVarQ96B49
PhosPhoSitePlusQ96B49
Domains : Interpro (EBI)TOMM6   
Domain families : Pfam (Sanger)TOM6p (PF15184)   
Domain families : Pfam (NCBI)pfam15184   
Conserved Domain (NCBI)TOMM6
DMDM Disease mutations100188893
Blocks (Seattle)TOMM6
SuperfamilyQ96B49
Peptide AtlasQ96B49
IPIIPI00014331   
Protein Interaction databases
DIP (DOE-UCLA)Q96B49
IntAct (EBI)Q96B49
BioGRIDTOMM6
STRING (EMBL)TOMM6
ZODIACTOMM6
Ontologies - Pathways
QuickGOQ96B49
Ontology : AmiGOmitochondrion  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  protein transport  macroautophagy  
Ontology : EGO-EBImitochondrion  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane translocase complex  protein transport  macroautophagy  
NDEx NetworkTOMM6
Atlas of Cancer Signalling NetworkTOMM6
Wikipedia pathwaysTOMM6
Orthology - Evolution
OrthoDB100188893
Phylogenetic Trees/Animal Genes : TreeFamTOMM6
HOVERGENQ96B49
HOGENOMQ96B49
Homologs : HomoloGeneTOMM6
Homology/Alignments : Family Browser (UCSC)TOMM6
Gene fusions - Rearrangements
Fusion : QuiverTOMM6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOMM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOMM6
dbVarTOMM6
ClinVarTOMM6
1000_GenomesTOMM6 
Exome Variant ServerTOMM6
Genetic variants : HAPMAP100188893
Genomic Variants (DGV)TOMM6 [DGVbeta]
DECIPHERTOMM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOMM6 
Mutations
ICGC Data PortalTOMM6 
TCGA Data PortalTOMM6 
Broad Tumor PortalTOMM6
OASIS PortalTOMM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOMM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTOMM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TOMM6
DgiDB (Drug Gene Interaction Database)TOMM6
DoCM (Curated mutations)TOMM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOMM6 (select a term)
intoGenTOMM6
Cancer3DTOMM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616168   
Orphanet
DisGeNETTOMM6
MedgenTOMM6
Genetic Testing Registry TOMM6
NextProtQ96B49 [Medical]
TSGene100188893
GENETestsTOMM6
Target ValidationTOMM6
Huge Navigator TOMM6 [HugePedia]
snp3D : Map Gene to Disease100188893
BioCentury BCIQTOMM6
ClinGenTOMM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100188893
Chemical/Pharm GKB GenePA164726679
Clinical trialTOMM6
Miscellaneous
canSAR (ICR)TOMM6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOMM6
EVEXTOMM6
GoPubMedTOMM6
iHOPTOMM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:56:28 CET 2018

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