Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TOR3A (torsin family 3 member A)

Identity

Alias_namesADIR
ATP-dependant interferon responsive
torsin family 3, member A
Alias_symbol (synonym)FLJ22345
ADIR2
Other alias
HGNC (Hugo) TOR3A
LocusID (NCBI) 64222
Atlas_Id 75064
Location 1q25.2  [Link to chromosome band 1q25]
Location_base_pair Starts at 179081977 and ends at 179095994 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BCL2L1 (20q11.21) / TOR3A (1q25.2)XPR1 (1q25.3) / TOR3A (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOR3A   11997
Cards
Entrez_Gene (NCBI)TOR3A  64222  torsin family 3 member A
AliasesADIR; ADIR2
GeneCards (Weizmann)TOR3A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:179081977-179095994 [Contig_View]  TOR3A [Vega]
TCGA cBioPortalTOR3A
AceView (NCBI)TOR3A
Genatlas (Paris)TOR3A
WikiGenes64222
SOURCE (Princeton)TOR3A
Genetics Home Reference (NIH)TOR3A
Genomic and cartography
GoldenPath hg38 (UCSC)TOR3A  -     chr1:179081977-179095994 +  1q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOR3A  -     1q25.2   [Description]    (hg19-Feb_2009)
EnsemblTOR3A - 1q25.2 [CytoView hg19]  TOR3A - 1q25.2 [CytoView hg38]
Mapping of homologs : NCBITOR3A [Mapview hg19]  TOR3A [Mapview hg38]
OMIM607555   
Gene and transcription
Genbank (Entrez)AJ299403 AJ299441 AK025998 AK130132 AK299966
RefSeq transcript (Entrez)NM_022371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOR3A
Cluster EST : UnigeneHs.584957 [ NCBI ]
CGAP (NCI)Hs.584957
Gene ExpressionTOR3A [ NCBI-GEO ]   TOR3A [ EBI - ARRAY_EXPRESS ]   TOR3A [ SEEK ]   TOR3A [ MEM ]
Gene Expression Viewer (FireBrowse)TOR3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64222
GTEX Portal (Tissue expression)TOR3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H497   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H497  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H497
Splice isoforms : SwissVarQ9H497
PhosPhoSitePlusQ9H497
Domains : Interpro (EBI)P-loop_NTPase    Torsin    Torsin-3A   
Domain families : Pfam (Sanger)Torsin (PF06309)   
Domain families : Pfam (NCBI)pfam06309   
Conserved Domain (NCBI)TOR3A
DMDM Disease mutations64222
Blocks (Seattle)TOR3A
SuperfamilyQ9H497
Peptide AtlasQ9H497
HPRD09615
IPIIPI00301631   IPI00386008   IPI00737378   IPI00983061   IPI00477102   IPI00478101   
Protein Interaction databases
DIP (DOE-UCLA)Q9H497
IntAct (EBI)Q9H497
BioGRIDTOR3A
STRING (EMBL)TOR3A
ZODIACTOR3A
Ontologies - Pathways
QuickGOQ9H497
Ontology : AmiGOATP binding  endoplasmic reticulum  endoplasmic reticulum lumen  ATPase activity  extracellular exosome  
Ontology : EGO-EBIATP binding  endoplasmic reticulum  endoplasmic reticulum lumen  ATPase activity  extracellular exosome  
NDEx NetworkTOR3A
Atlas of Cancer Signalling NetworkTOR3A
Wikipedia pathwaysTOR3A
Orthology - Evolution
OrthoDB64222
Phylogenetic Trees/Animal Genes : TreeFamTOR3A
HOVERGENQ9H497
HOGENOMQ9H497
Homologs : HomoloGeneTOR3A
Homology/Alignments : Family Browser (UCSC)TOR3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOR3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOR3A
dbVarTOR3A
ClinVarTOR3A
1000_GenomesTOR3A 
Exome Variant ServerTOR3A
ExAC (Exome Aggregation Consortium)TOR3A (select the gene name)
Genetic variants : HAPMAP64222
Genomic Variants (DGV)TOR3A [DGVbeta]
DECIPHERTOR3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOR3A 
Mutations
ICGC Data PortalTOR3A 
TCGA Data PortalTOR3A 
Broad Tumor PortalTOR3A
OASIS PortalTOR3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOR3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTOR3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TOR3A
DgiDB (Drug Gene Interaction Database)TOR3A
DoCM (Curated mutations)TOR3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOR3A (select a term)
intoGenTOR3A
Cancer3DTOR3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607555   
Orphanet
MedgenTOR3A
Genetic Testing Registry TOR3A
NextProtQ9H497 [Medical]
TSGene64222
GENETestsTOR3A
Target ValidationTOR3A
Huge Navigator TOR3A [HugePedia]
snp3D : Map Gene to Disease64222
BioCentury BCIQTOR3A
ClinGenTOR3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64222
Chemical/Pharm GKB GenePA36678
Clinical trialTOR3A
Miscellaneous
canSAR (ICR)TOR3A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOR3A
EVEXTOR3A
GoPubMedTOR3A
iHOPTOR3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:17 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.