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TOR4A (torsin family 4 member A)

Identity

Alias (NCBI)C9orf167
HGNC (Hugo) TOR4A
HGNC Alias symbFLJ20245
HGNC Previous nameC9orf167
HGNC Previous namechromosome 9 open reading frame 167
 torsin family 4, member A
LocusID (NCBI) 54863
Atlas_Id 75065
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137277726 and ends at 137282641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TOR4A   25981
Cards
Entrez_Gene (NCBI)TOR4A    torsin family 4 member A
AliasesC9orf167
GeneCards (Weizmann)TOR4A
Ensembl hg19 (Hinxton)ENSG00000198113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198113 [Gene_View]  ENSG00000198113 [Sequence]  chr9:137277726-137282641 [Contig_View]  TOR4A [Vega]
ICGC DataPortalENSG00000198113
TCGA cBioPortalTOR4A
AceView (NCBI)TOR4A
Genatlas (Paris)TOR4A
SOURCE (Princeton)TOR4A
Genetics Home Reference (NIH)TOR4A
Genomic and cartography
GoldenPath hg38 (UCSC)TOR4A  -     chr9:137277726-137282641 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOR4A  -     9q34.3   [Description]    (hg19-Feb_2009)
GoldenPathTOR4A - 9q34.3 [CytoView hg19]  TOR4A - 9q34.3 [CytoView hg38]
ImmunoBaseENSG00000198113
Genome Data Viewer NCBITOR4A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000252 AK000392 AK023361
RefSeq transcript (Entrez)NM_017723
Consensus coding sequences : CCDS (NCBI)TOR4A
Gene ExpressionTOR4A [ NCBI-GEO ]   TOR4A [ EBI - ARRAY_EXPRESS ]   TOR4A [ SEEK ]   TOR4A [ MEM ]
Gene Expression Viewer (FireBrowse)TOR4A [ Firebrowse - Broad ]
GenevisibleExpression of TOR4A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54863
GTEX Portal (Tissue expression)TOR4A
Human Protein AtlasENSG00000198113-TOR4A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXH8
PhosPhoSitePlusQ9NXH8
Domains : Interpro (EBI)AAA+_ATPase    P-loop_NTPase    Torsin    Torsin-4A   
Domain families : Pfam (Sanger)Torsin (PF06309)   
Domain families : Pfam (NCBI)pfam06309   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)TOR4A
SuperfamilyQ9NXH8
AlphaFold pdb e-kbQ9NXH8   
Human Protein Atlas [tissue]ENSG00000198113-TOR4A [tissue]
HPRD07886
Protein Interaction databases
DIP (DOE-UCLA)Q9NXH8
IntAct (EBI)Q9NXH8
BioGRIDTOR4A
STRING (EMBL)TOR4A
ZODIACTOR4A
Ontologies - Pathways
QuickGOQ9NXH8
Ontology : AmiGOplatelet degranulation  ATP binding  extracellular region  nuclear envelope  endoplasmic reticulum lumen  integral component of membrane  ATPase  platelet alpha granule lumen  
Ontology : EGO-EBIplatelet degranulation  ATP binding  extracellular region  nuclear envelope  endoplasmic reticulum lumen  integral component of membrane  ATPase  platelet alpha granule lumen  
NDEx NetworkTOR4A
Atlas of Cancer Signalling NetworkTOR4A
Wikipedia pathwaysTOR4A
Orthology - Evolution
OrthoDB54863
GeneTree (enSembl)ENSG00000198113
Phylogenetic Trees/Animal Genes : TreeFamTOR4A
Homologs : HomoloGeneTOR4A
Homology/Alignments : Family Browser (UCSC)TOR4A
Gene fusions - Rearrangements
Fusion : QuiverTOR4A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOR4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOR4A
dbVarTOR4A
ClinVarTOR4A
MonarchTOR4A
1000_GenomesTOR4A 
Exome Variant ServerTOR4A
GNOMAD BrowserENSG00000198113
Varsome BrowserTOR4A
ACMGTOR4A variants
VarityQ9NXH8
Genomic Variants (DGV)TOR4A [DGVbeta]
DECIPHERTOR4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOR4A 
Mutations
ICGC Data PortalTOR4A 
TCGA Data PortalTOR4A 
Broad Tumor PortalTOR4A
OASIS PortalTOR4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTOR4A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTOR4A
Mutations and Diseases : HGMDTOR4A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTOR4A
DgiDB (Drug Gene Interaction Database)TOR4A
DoCM (Curated mutations)TOR4A
CIViC (Clinical Interpretations of Variants in Cancer)TOR4A
Cancer3DTOR4A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTOR4A
MedgenTOR4A
Genetic Testing Registry TOR4A
NextProtQ9NXH8 [Medical]
GENETestsTOR4A
Target ValidationTOR4A
Huge Navigator TOR4A [HugePedia]
ClinGenTOR4A
Clinical trials, drugs, therapy
MyCancerGenomeTOR4A
Protein Interactions : CTDTOR4A
Pharm GKB GenePA162380839
PharosQ9NXH8
Clinical trialTOR4A
Miscellaneous
canSAR (ICR)TOR4A
HarmonizomeTOR4A
DataMed IndexTOR4A
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTOR4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:34 CEST 2021

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