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TOR4A (torsin family 4 member A)

Identity

Alias_namesC9orf167
chromosome 9 open reading frame 167
torsin family 4, member A
Alias_symbol (synonym)FLJ20245
Other alias
HGNC (Hugo) TOR4A
LocusID (NCBI) 54863
Atlas_Id 75065
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137277828 and ends at 137282641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TOR4A   25981
Cards
Entrez_Gene (NCBI)TOR4A  54863  torsin family 4 member A
AliasesC9orf167
GeneCards (Weizmann)TOR4A
Ensembl hg19 (Hinxton)ENSG00000198113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198113 [Gene_View]  chr9:137277828-137282641 [Contig_View]  TOR4A [Vega]
ICGC DataPortalENSG00000198113
TCGA cBioPortalTOR4A
AceView (NCBI)TOR4A
Genatlas (Paris)TOR4A
WikiGenes54863
SOURCE (Princeton)TOR4A
Genetics Home Reference (NIH)TOR4A
Genomic and cartography
GoldenPath hg38 (UCSC)TOR4A  -     chr9:137277828-137282641 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TOR4A  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblTOR4A - 9q34.3 [CytoView hg19]  TOR4A - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBITOR4A [Mapview hg19]  TOR4A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000252 AK000392 AK023361 BC169268 BC169269
RefSeq transcript (Entrez)NM_017723
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TOR4A
Cluster EST : UnigeneHs.495541 [ NCBI ]
CGAP (NCI)Hs.495541
Alternative Splicing GalleryENSG00000198113
Gene ExpressionTOR4A [ NCBI-GEO ]   TOR4A [ EBI - ARRAY_EXPRESS ]   TOR4A [ SEEK ]   TOR4A [ MEM ]
Gene Expression Viewer (FireBrowse)TOR4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54863
GTEX Portal (Tissue expression)TOR4A
Human Protein AtlasENSG00000198113-TOR4A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXH8
Splice isoforms : SwissVarQ9NXH8
PhosPhoSitePlusQ9NXH8
Domains : Interpro (EBI)AAA+_ATPase    P-loop_NTPase    Torsin    Torsin-4A   
Domain families : Pfam (Sanger)Torsin (PF06309)   
Domain families : Pfam (NCBI)pfam06309   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)TOR4A
DMDM Disease mutations54863
Blocks (Seattle)TOR4A
SuperfamilyQ9NXH8
Human Protein Atlas [tissue]ENSG00000198113-TOR4A [tissue]
Peptide AtlasQ9NXH8
HPRD07886
IPIIPI00015101   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXH8
IntAct (EBI)Q9NXH8
FunCoupENSG00000198113
BioGRIDTOR4A
STRING (EMBL)TOR4A
ZODIACTOR4A
Ontologies - Pathways
QuickGOQ9NXH8
Ontology : AmiGOplatelet degranulation  ATP binding  extracellular region  integral component of membrane  platelet alpha granule lumen  
Ontology : EGO-EBIplatelet degranulation  ATP binding  extracellular region  integral component of membrane  platelet alpha granule lumen  
NDEx NetworkTOR4A
Atlas of Cancer Signalling NetworkTOR4A
Wikipedia pathwaysTOR4A
Orthology - Evolution
OrthoDB54863
GeneTree (enSembl)ENSG00000198113
Phylogenetic Trees/Animal Genes : TreeFamTOR4A
HOVERGENQ9NXH8
HOGENOMQ9NXH8
Homologs : HomoloGeneTOR4A
Homology/Alignments : Family Browser (UCSC)TOR4A
Gene fusions - Rearrangements
Tumor Fusion PortalTOR4A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTOR4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOR4A
dbVarTOR4A
ClinVarTOR4A
1000_GenomesTOR4A 
Exome Variant ServerTOR4A
ExAC (Exome Aggregation Consortium)ENSG00000198113
GNOMAD BrowserENSG00000198113
Genetic variants : HAPMAP54863
Genomic Variants (DGV)TOR4A [DGVbeta]
DECIPHERTOR4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTOR4A 
Mutations
ICGC Data PortalTOR4A 
TCGA Data PortalTOR4A 
Broad Tumor PortalTOR4A
OASIS PortalTOR4A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTOR4A
BioMutasearch TOR4A
DgiDB (Drug Gene Interaction Database)TOR4A
DoCM (Curated mutations)TOR4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TOR4A (select a term)
intoGenTOR4A
Cancer3DTOR4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTOR4A
MedgenTOR4A
Genetic Testing Registry TOR4A
NextProtQ9NXH8 [Medical]
TSGene54863
GENETestsTOR4A
Target ValidationTOR4A
Huge Navigator TOR4A [HugePedia]
snp3D : Map Gene to Disease54863
BioCentury BCIQTOR4A
ClinGenTOR4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54863
Chemical/Pharm GKB GenePA162380839
Clinical trialTOR4A
Miscellaneous
canSAR (ICR)TOR4A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTOR4A
EVEXTOR4A
GoPubMedTOR4A
iHOPTOR4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:54 CET 2017

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