Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TOX3 (TOX high mobility group box family member 3)

Identity

Other namesCAGF9
TNRC9
HGNC (Hugo) TOX3
LocusID (NCBI) 27324
Atlas_Id 50991
Location 16q12.1
Location_base_pair Starts at 52471918 and ends at 52580806 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TOX3   11972
Cards
Entrez_Gene (NCBI)TOX3  27324  TOX high mobility group box family member 3
GeneCards (Weizmann)TOX3
Ensembl hg19 (Hinxton)ENSG00000103460 [Gene_View]  chr16:52471918-52580806 [Contig_View]  TOX3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103460 [Gene_View]  chr16:52471918-52580806 [Contig_View]  TOX3 [Vega]
ICGC DataPortalENSG00000103460
TCGA cBioPortalTOX3
AceView (NCBI)TOX3
Genatlas (Paris)TOX3
WikiGenes27324
SOURCE (Princeton)TOX3
Genomic and cartography
GoldenPath hg19 (UCSC)TOX3  -     chr16:52471918-52580806 -  16q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TOX3  -     16q12.1   [Description]    (hg38-Dec_2013)
EnsemblTOX3 - 16q12.1 [CytoView hg19]  TOX3 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBITOX3 [Mapview hg19]  TOX3 [Mapview hg38]
OMIM611416   
Gene and transcription
Genbank (Entrez)AK025084 AK027006 AK095095 AK299202 BC167799
RefSeq transcript (Entrez)NM_001080430 NM_001146188
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_012623 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)TOX3
Cluster EST : UnigeneHs.460789 [ NCBI ]
CGAP (NCI)Hs.460789
Alternative Splicing : Fast-db (Paris)GSHG0011846
Alternative Splicing GalleryENSG00000103460
Gene ExpressionTOX3 [ NCBI-GEO ]     TOX3 [ SEEK ]   TOX3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15405 (Uniprot)
NextProtO15405  [Medical]
With graphics : InterProO15405
Splice isoforms : SwissVarO15405 (Swissvar)
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom   
Related proteins : CluSTrO15405
Domain families : Pfam (Sanger)HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
DMDM Disease mutations27324
Blocks (Seattle)O15405
Human Protein AtlasENSG00000103460
Peptide AtlasO15405
IPIIPI00903025   IPI00929129   
Protein Interaction databases
DIP (DOE-UCLA)O15405
IntAct (EBI)O15405
FunCoupENSG00000103460
BioGRIDTOX3
IntegromeDBTOX3
STRING (EMBL)TOX3
Ontologies - Pathways
QuickGOO15405
Ontology : AmiGOchromatin binding  protein binding  nucleus  chromatin remodeling  transcription, DNA-templated  apoptotic process  estrogen response element binding  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of transcription, DNA-templated  phosphoprotein binding  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  chromatin remodeling  transcription, DNA-templated  apoptotic process  estrogen response element binding  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of transcription, DNA-templated  phosphoprotein binding  
Protein Interaction DatabaseTOX3
DoCM (Curated mutations)TOX3
Wikipedia pathwaysTOX3
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerTOX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TOX3
dbVarTOX3
ClinVarTOX3
1000_GenomesTOX3 
Exome Variant ServerTOX3
SNP (GeneSNP Utah)TOX3
SNP : HGBaseTOX3
Genetic variants : HAPMAPTOX3
Genomic Variants (DGV)TOX3 [DGVbeta]
Mutations
ICGC Data PortalTOX3 
TCGA Data PortalTOX3 
Tumor PortalTOX3
Somatic Mutations in Cancer : COSMICTOX3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:52471918-52580806
CONAN: Copy Number AnalysisTOX3 
Mutations and Diseases : HGMDTOX3
OMIM611416   
MedgenTOX3
NextProtO15405 [Medical]
GENETestsTOX3
Disease Genetic AssociationTOX3
Huge Navigator TOX3 [HugePedia]  TOX3 [HugeCancerGEM]
snp3D : Map Gene to Disease27324
DGIdb (Drug Gene Interaction db)TOX3
General knowledge
Homologs : HomoloGeneTOX3
Homology/Alignments : Family Browser (UCSC)TOX3
Phylogenetic Trees/Animal Genes : TreeFamTOX3
Chemical/Protein Interactions : CTD27324
Chemical/Pharm GKB GenePA162406752
Clinical trialTOX3
Cancer Resource (Charite)ENSG00000103460
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMineTOX3
GoPubMedTOX3
iHOPTOX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:23:32 CEST 2015

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