Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TOX3 (TOX high mobility group box family member 3)

Identity

Other namesCAGF9
TNRC9
HGNC (Hugo) TOX3
LocusID (NCBI) 27324
Location 16q12.1
Location_base_pair Starts at 52471918 and ends at 52580806 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TOX3   11972
Cards
Entrez_Gene (NCBI)TOX3  27324  TOX high mobility group box family member 3
GeneCards (Weizmann)TOX3
Ensembl (Hinxton)ENSG00000103460 [Gene_View]  chr16:52471918-52580806 [Contig_View]  TOX3 [Vega]
ICGC DataPortalENSG00000103460
cBioPortalTOX3
AceView (NCBI)TOX3
Genatlas (Paris)TOX3
WikiGenes27324
SOURCE (Princeton)NM_001080430 NM_001146188
Genomic and cartography
GoldenPath (UCSC)TOX3  -  16q12.1   chr16:52471918-52580806 -  16q12.1   [Description]    (hg19-Feb_2009)
EnsemblTOX3 - 16q12.1 [CytoView]
Mapping of homologs : NCBITOX3 [Mapview]
OMIM611416   
Gene and transcription
Genbank (Entrez)AK025084 AK027006 AK095095 AK299202 BC167799
RefSeq transcript (Entrez)NM_001080430 NM_001146188
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_012623 NT_010498 NW_001838289 NW_004929402
Consensus coding sequences : CCDS (NCBI)TOX3
Cluster EST : UnigeneHs.460789 [ NCBI ]
CGAP (NCI)Hs.460789
Alternative Splicing : Fast-db (Paris)GSHG0011846
Alternative Splicing GalleryENSG00000103460
Gene ExpressionTOX3 [ NCBI-GEO ]     TOX3 [ SEEK ]   TOX3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15405 (Uniprot)
NextProtO15405  [Medical]
With graphics : InterProO15405
Splice isoforms : SwissVarO15405 (Swissvar)
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom [organisation]  
Related proteins : CluSTrO15405
Domain families : Pfam (Sanger)HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
DMDM Disease mutations27324
Blocks (Seattle)O15405
Human Protein AtlasENSG00000103460 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO15405
IPIIPI00903025   IPI00929129   
Protein Interaction databases
DIP (DOE-UCLA)O15405
IntAct (EBI)O15405
FunCoupENSG00000103460
BioGRIDTOX3
InParanoidO15405
Interologous Interaction database O15405
IntegromeDBTOX3
STRING (EMBL)TOX3
Ontologies - Pathways
Ontology : AmiGOchromatin binding  protein binding  nucleus  transcription, DNA-templated  apoptotic process  estrogen response element binding  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of transcription, DNA-templated  phosphoprotein binding  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  transcription, DNA-templated  apoptotic process  estrogen response element binding  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of transcription, DNA-templated  phosphoprotein binding  
Protein Interaction DatabaseTOX3
Wikipedia pathwaysTOX3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TOX3
snp3D : Map Gene to Disease27324
SNP (GeneSNP Utah)TOX3
SNP : HGBaseTOX3
Genetic variants : HAPMAPTOX3
Exome VariantTOX3
1000_GenomesTOX3 
ICGC programENSG00000103460 
Somatic Mutations in Cancer : COSMICTOX3 
CONAN: Copy Number AnalysisTOX3 
Mutations and Diseases : HGMDTOX3
Mutations and Diseases : intOGenTOX3
Genomic VariantsTOX3  TOX3 [DGVbeta]
dbVarTOX3
ClinVarTOX3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM611416   
MedgenTOX3
GENETestsTOX3
Disease Genetic AssociationTOX3
Huge Navigator TOX3 [HugePedia]  TOX3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTOX3
Homology/Alignments : Family Browser (UCSC)TOX3
Phylogenetic Trees/Animal Genes : TreeFamTOX3
Chemical/Protein Interactions : CTD27324
Chemical/Pharm GKB GenePA162406752
Clinical trialTOX3
Cancer Resource (Charite)ENSG00000103460
Other databases
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
CoreMineTOX3
iHOPTOX3
OncoSearchTOX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:08:21 CEST 2014

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