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TP53INP2 (tumor protein p53 inducible nuclear protein 2)

Identity

Alias_namesC20orf110
chromosome 20 open reading frame 110
Alias_symbol (synonym)FLJ21759
FLJ23500
DKFZp434B2411
DKFZp434O0827
dJ1181N3.1
PINH
DOR
Other alias
HGNC (Hugo) TP53INP2
LocusID (NCBI) 58476
Atlas_Id 42920
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33292148 and ends at 33301237 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HMGCR (5q13.3) / TP53INP2 (20q11.22)TP53INP2 (20q11.22) / ERGIC1 (5q35.1)TP53INP2 (20q11.22) / RPL34 (4q25)
TP53INP2 (20q11.22) / TP53INP2 (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TP53INP2   16104
Cards
Entrez_Gene (NCBI)TP53INP2  58476  tumor protein p53 inducible nuclear protein 2
AliasesC20orf110; DOR; PINH; dJ1181N3.1
GeneCards (Weizmann)TP53INP2
Ensembl hg19 (Hinxton)ENSG00000078804 [Gene_View]  chr20:33292148-33301237 [Contig_View]  TP53INP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000078804 [Gene_View]  chr20:33292148-33301237 [Contig_View]  TP53INP2 [Vega]
ICGC DataPortalENSG00000078804
TCGA cBioPortalTP53INP2
AceView (NCBI)TP53INP2
Genatlas (Paris)TP53INP2
WikiGenes58476
SOURCE (Princeton)TP53INP2
Genetics Home Reference (NIH)TP53INP2
Genomic and cartography
GoldenPath hg19 (UCSC)TP53INP2  -     chr20:33292148-33301237 +  20q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TP53INP2  -     20q11.22   [Description]    (hg38-Dec_2013)
EnsemblTP53INP2 - 20q11.22 [CytoView hg19]  TP53INP2 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBITP53INP2 [Mapview hg19]  TP53INP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ297792 AK025412 AK027153 AK292443 AL122050
RefSeq transcript (Entrez)NM_021202
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)TP53INP2
Cluster EST : UnigeneHs.516994 [ NCBI ]
CGAP (NCI)Hs.516994
Alternative Splicing GalleryENSG00000078804
Gene ExpressionTP53INP2 [ NCBI-GEO ]   TP53INP2 [ EBI - ARRAY_EXPRESS ]   TP53INP2 [ SEEK ]   TP53INP2 [ MEM ]
Gene Expression Viewer (FireBrowse)TP53INP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58476
GTEX Portal (Tissue expression)TP53INP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXH6
Splice isoforms : SwissVarQ8IXH6
PhosPhoSitePlusQ8IXH6
Domains : Interpro (EBI)TP53INP    TP53INP2   
Domain families : Pfam (Sanger)DOR (PF14839)   
Domain families : Pfam (NCBI)pfam14839   
Conserved Domain (NCBI)TP53INP2
DMDM Disease mutations58476
Blocks (Seattle)TP53INP2
SuperfamilyQ8IXH6
Human Protein AtlasENSG00000078804
Peptide AtlasQ8IXH6
HPRD15546
IPIIPI00010467   IPI00643712   IPI00640716   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXH6
IntAct (EBI)Q8IXH6
FunCoupENSG00000078804
BioGRIDTP53INP2
STRING (EMBL)TP53INP2
ZODIACTP53INP2
Ontologies - Pathways
QuickGOQ8IXH6
Ontology : AmiGOautophagosome assembly  osteoblast differentiation  tissue homeostasis  protein binding  nucleus  autophagosome  cytosol  transcription, DNA-templated  ubiquitin-dependent protein catabolic process  positive regulation of autophagy  PML body  cytoplasmic vesicle  ubiquitin binding  positive regulation of transcription, DNA-templated  negative regulation of cellular protein localization  
Ontology : EGO-EBIautophagosome assembly  osteoblast differentiation  tissue homeostasis  protein binding  nucleus  autophagosome  cytosol  transcription, DNA-templated  ubiquitin-dependent protein catabolic process  positive regulation of autophagy  PML body  cytoplasmic vesicle  ubiquitin binding  positive regulation of transcription, DNA-templated  negative regulation of cellular protein localization  
NDEx NetworkTP53INP2
Atlas of Cancer Signalling NetworkTP53INP2
Wikipedia pathwaysTP53INP2
Orthology - Evolution
OrthoDB58476
GeneTree (enSembl)ENSG00000078804
Phylogenetic Trees/Animal Genes : TreeFamTP53INP2
HOVERGENQ8IXH6
HOGENOMQ8IXH6
Homologs : HomoloGeneTP53INP2
Homology/Alignments : Family Browser (UCSC)TP53INP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTP53INP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TP53INP2
dbVarTP53INP2
ClinVarTP53INP2
1000_GenomesTP53INP2 
Exome Variant ServerTP53INP2
ExAC (Exome Aggregation Consortium)TP53INP2 (select the gene name)
Genetic variants : HAPMAP58476
Genomic Variants (DGV)TP53INP2 [DGVbeta]
DECIPHER (Syndromes)20:33292148-33301237  ENSG00000078804
CONAN: Copy Number AnalysisTP53INP2 
Mutations
ICGC Data PortalTP53INP2 
TCGA Data PortalTP53INP2 
Broad Tumor PortalTP53INP2
OASIS PortalTP53INP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTP53INP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTP53INP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TP53INP2
DgiDB (Drug Gene Interaction Database)TP53INP2
DoCM (Curated mutations)TP53INP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TP53INP2 (select a term)
intoGenTP53INP2
Cancer3DTP53INP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTP53INP2
Genetic Testing Registry TP53INP2
NextProtQ8IXH6 [Medical]
TSGene58476
GENETestsTP53INP2
Huge Navigator TP53INP2 [HugePedia]
snp3D : Map Gene to Disease58476
BioCentury BCIQTP53INP2
ClinGenTP53INP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58476
Chemical/Pharm GKB GenePA25650
Clinical trialTP53INP2
Miscellaneous
canSAR (ICR)TP53INP2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTP53INP2
EVEXTP53INP2
GoPubMedTP53INP2
iHOPTP53INP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:08 CEST 2017

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