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TP53TG1 (TP53 target 1 (non-protein coding))

Identity

Alias_namesTP53AP1
TP53 activated protein 1
Alias_symbol (synonym)H_RG012D21.9
LINC00096
Other aliasNCRNA00096
P53TG1
P53TG1-D
HGNC (Hugo) TP53TG1
LocusID (NCBI) 11257
Atlas_Id 42665
Location 7q21.12  [Link to chromosome band 7q21]
Location_base_pair Starts at 87325225 and ends at 87345515 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TP53TG1   17026
Cards
Entrez_Gene (NCBI)TP53TG1  11257  TP53 target 1 (non-protein coding)
AliasesLINC00096; NCRNA00096; P53TG1; P53TG1-D; 
TP53AP1
GeneCards (Weizmann)TP53TG1
Ensembl hg19 (Hinxton)ENSG00000182165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182165 [Gene_View]  chr7:87325225-87345515 [Contig_View]  TP53TG1 [Vega]
ICGC DataPortalENSG00000182165
TCGA cBioPortalTP53TG1
AceView (NCBI)TP53TG1
Genatlas (Paris)TP53TG1
WikiGenes11257
SOURCE (Princeton)TP53TG1
Genetics Home Reference (NIH)TP53TG1
Genomic and cartography
GoldenPath hg38 (UCSC)TP53TG1  -     chr7:87325225-87345515 -  7q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TP53TG1  -     7q21.12   [Description]    (hg19-Feb_2009)
EnsemblTP53TG1 - 7q21.12 [CytoView hg19]  TP53TG1 - 7q21.12 [CytoView hg38]
Mapping of homologs : NCBITP53TG1 [Mapview hg19]  TP53TG1 [Mapview hg38]
OMIM616403   
Gene and transcription
Genbank (Entrez)AB007455 AB007456 AB007457 AB007458 AK292782
RefSeq transcript (Entrez)NM_007233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TP53TG1
Cluster EST : UnigeneHs.274329 [ NCBI ]
CGAP (NCI)Hs.274329
Alternative Splicing GalleryENSG00000182165
Gene ExpressionTP53TG1 [ NCBI-GEO ]   TP53TG1 [ EBI - ARRAY_EXPRESS ]   TP53TG1 [ SEEK ]   TP53TG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TP53TG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11257
GTEX Portal (Tissue expression)TP53TG1
Human Protein AtlasENSG00000182165-TP53TG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2A0
Splice isoforms : SwissVarQ9Y2A0
PhosPhoSitePlusQ9Y2A0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TP53TG1
DMDM Disease mutations11257
Blocks (Seattle)TP53TG1
SuperfamilyQ9Y2A0
Human Protein Atlas [tissue]ENSG00000182165-TP53TG1 [tissue]
Peptide AtlasQ9Y2A0
HPRD10276
IPIIPI00027013   IPI00022031   IPI00872764   IPI00383635   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2A0
IntAct (EBI)Q9Y2A0
FunCoupENSG00000182165
BioGRIDTP53TG1
STRING (EMBL)TP53TG1
ZODIACTP53TG1
Ontologies - Pathways
QuickGOQ9Y2A0
Ontology : AmiGOmolecular_function  response to stress  cellular response to DNA damage stimulus  
Ontology : EGO-EBImolecular_function  response to stress  cellular response to DNA damage stimulus  
NDEx NetworkTP53TG1
Atlas of Cancer Signalling NetworkTP53TG1
Wikipedia pathwaysTP53TG1
Orthology - Evolution
OrthoDB11257
GeneTree (enSembl)ENSG00000182165
Phylogenetic Trees/Animal Genes : TreeFamTP53TG1
HOVERGENQ9Y2A0
HOGENOMQ9Y2A0
Homologs : HomoloGeneTP53TG1
Homology/Alignments : Family Browser (UCSC)TP53TG1
Gene fusions - Rearrangements
Tumor Fusion PortalTP53TG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTP53TG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TP53TG1
dbVarTP53TG1
ClinVarTP53TG1
1000_GenomesTP53TG1 
Exome Variant ServerTP53TG1
ExAC (Exome Aggregation Consortium)ENSG00000182165
GNOMAD BrowserENSG00000182165
Genetic variants : HAPMAP11257
Genomic Variants (DGV)TP53TG1 [DGVbeta]
DECIPHERTP53TG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTP53TG1 
Mutations
ICGC Data PortalTP53TG1 
TCGA Data PortalTP53TG1 
Broad Tumor PortalTP53TG1
OASIS PortalTP53TG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTP53TG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTP53TG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TP53TG1
DgiDB (Drug Gene Interaction Database)TP53TG1
DoCM (Curated mutations)TP53TG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TP53TG1 (select a term)
intoGenTP53TG1
Cancer3DTP53TG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616403   
Orphanet
DisGeNETTP53TG1
MedgenTP53TG1
Genetic Testing Registry TP53TG1
NextProtQ9Y2A0 [Medical]
TSGene11257
GENETestsTP53TG1
Target ValidationTP53TG1
Huge Navigator TP53TG1 [HugePedia]
snp3D : Map Gene to Disease11257
BioCentury BCIQTP53TG1
ClinGenTP53TG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11257
Chemical/Pharm GKB GenePA164726681
Clinical trialTP53TG1
Miscellaneous
canSAR (ICR)TP53TG1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTP53TG1
EVEXTP53TG1
GoPubMedTP53TG1
iHOPTP53TG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:39:21 CET 2017

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