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TP53TG3B (TP53 target 3B)

Identity

Other alias-
HGNC (Hugo) TP53TG3B
LocusID (NCBI) 729355
Atlas_Id 75066
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 33205583 and ends at 33208179 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TP53TG3B   37202
Cards
Entrez_Gene (NCBI)TP53TG3B  729355  TP53 target 3B
Aliases
GeneCards (Weizmann)TP53TG3B
Ensembl hg19 (Hinxton)ENSG00000261509 [Gene_View]  chr16:33205583-33208179 [Contig_View]  TP53TG3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000261509 [Gene_View]  chr16:33205583-33208179 [Contig_View]  TP53TG3B [Vega]
ICGC DataPortalENSG00000261509
TCGA cBioPortalTP53TG3B
AceView (NCBI)TP53TG3B
Genatlas (Paris)TP53TG3B
WikiGenes729355
SOURCE (Princeton)TP53TG3B
Genetics Home Reference (NIH)TP53TG3B
Genomic and cartography
GoldenPath hg19 (UCSC)TP53TG3B  -     chr16:33205583-33208179 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TP53TG3B  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblTP53TG3B - 16p11.2 [CytoView hg19]  TP53TG3B - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBITP53TG3B [Mapview hg19]  TP53TG3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB023508 AK097435 AK312220 AL133588 BC096733
RefSeq transcript (Entrez)NM_001099687 NM_001205265
RefSeq genomic (Entrez)NC_000016 NT_187260
Consensus coding sequences : CCDS (NCBI)TP53TG3B
Cluster EST : UnigeneHs.706716 [ NCBI ]
CGAP (NCI)Hs.706716
Alternative Splicing GalleryENSG00000261509
Gene ExpressionTP53TG3B [ NCBI-GEO ]   TP53TG3B [ EBI - ARRAY_EXPRESS ]   TP53TG3B [ SEEK ]   TP53TG3B [ MEM ]
Gene Expression Viewer (FireBrowse)TP53TG3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729355
GTEX Portal (Tissue expression)TP53TG3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULZ0
Splice isoforms : SwissVarQ9ULZ0
PhosPhoSitePlusQ9ULZ0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TP53TG3B
DMDM Disease mutations729355
Blocks (Seattle)TP53TG3B
SuperfamilyQ9ULZ0
Human Protein AtlasENSG00000261509
Peptide AtlasQ9ULZ0
Protein Interaction databases
DIP (DOE-UCLA)Q9ULZ0
IntAct (EBI)Q9ULZ0
FunCoupENSG00000261509
BioGRIDTP53TG3B
STRING (EMBL)TP53TG3B
ZODIACTP53TG3B
Ontologies - Pathways
QuickGOQ9ULZ0
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkTP53TG3B
Atlas of Cancer Signalling NetworkTP53TG3B
Wikipedia pathwaysTP53TG3B
Orthology - Evolution
OrthoDB729355
GeneTree (enSembl)ENSG00000261509
Phylogenetic Trees/Animal Genes : TreeFamTP53TG3B
HOVERGENQ9ULZ0
HOGENOMQ9ULZ0
Homologs : HomoloGeneTP53TG3B
Homology/Alignments : Family Browser (UCSC)TP53TG3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTP53TG3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TP53TG3B
dbVarTP53TG3B
ClinVarTP53TG3B
1000_GenomesTP53TG3B 
Exome Variant ServerTP53TG3B
ExAC (Exome Aggregation Consortium)TP53TG3B (select the gene name)
Genetic variants : HAPMAP729355
Genomic Variants (DGV)TP53TG3B [DGVbeta]
DECIPHER (Syndromes)16:33205583-33208179  ENSG00000261509
CONAN: Copy Number AnalysisTP53TG3B 
Mutations
ICGC Data PortalTP53TG3B 
TCGA Data PortalTP53TG3B 
Broad Tumor PortalTP53TG3B
OASIS PortalTP53TG3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTP53TG3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTP53TG3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TP53TG3B
DgiDB (Drug Gene Interaction Database)TP53TG3B
DoCM (Curated mutations)TP53TG3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TP53TG3B (select a term)
intoGenTP53TG3B
Cancer3DTP53TG3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTP53TG3B
Genetic Testing Registry TP53TG3B
NextProtQ9ULZ0 [Medical]
TSGene729355
GENETestsTP53TG3B
Huge Navigator TP53TG3B [HugePedia]
snp3D : Map Gene to Disease729355
BioCentury BCIQTP53TG3B
ClinGenTP53TG3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729355
Chemical/Pharm GKB GenePA165450804
Clinical trialTP53TG3B
Miscellaneous
canSAR (ICR)TP53TG3B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTP53TG3B
EVEXTP53TG3B
GoPubMedTP53TG3B
iHOPTP53TG3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:22 CET 2017

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