Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TP53TG3C (TP53 target 3C)

Identity

Other aliasTP53TG3
HGNC (Hugo) TP53TG3C
LocusID (NCBI) 653550
Atlas_Id 75067
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 33205585 and ends at 33207624 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TP53TG3C   42962
Cards
Entrez_Gene (NCBI)TP53TG3C  653550  TP53 target 3C
AliasesTP53TG3
GeneCards (Weizmann)TP53TG3C
Ensembl hg19 (Hinxton)ENSG00000205457 [Gene_View]  chr16:33205585-33207624 [Contig_View]  TP53TG3C [Vega]
Ensembl hg38 (Hinxton)ENSG00000205457 [Gene_View]  chr16:33205585-33207624 [Contig_View]  TP53TG3C [Vega]
ICGC DataPortalENSG00000205457
TCGA cBioPortalTP53TG3C
AceView (NCBI)TP53TG3C
Genatlas (Paris)TP53TG3C
WikiGenes653550
SOURCE (Princeton)TP53TG3C
Genetics Home Reference (NIH)TP53TG3C
Genomic and cartography
GoldenPath hg19 (UCSC)TP53TG3C  -     chr16:33205585-33207624 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TP53TG3C  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblTP53TG3C - 16p11.2 [CytoView hg19]  TP53TG3C - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBITP53TG3C [Mapview hg19]  TP53TG3C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB023508 AK097435 AK312220 AL133588 BC096733
RefSeq transcript (Entrez)NM_001205259 NM_001205260
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)TP53TG3C
Cluster EST : UnigeneHs.624982 [ NCBI ]
CGAP (NCI)Hs.624982
Alternative Splicing GalleryENSG00000205457
Gene ExpressionTP53TG3C [ NCBI-GEO ]   TP53TG3C [ EBI - ARRAY_EXPRESS ]   TP53TG3C [ SEEK ]   TP53TG3C [ MEM ]
Gene Expression Viewer (FireBrowse)TP53TG3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653550
GTEX Portal (Tissue expression)TP53TG3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULZ0
Splice isoforms : SwissVarQ9ULZ0
PhosPhoSitePlusQ9ULZ0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TP53TG3C
DMDM Disease mutations653550
Blocks (Seattle)TP53TG3C
SuperfamilyQ9ULZ0
Human Protein AtlasENSG00000205457
Peptide AtlasQ9ULZ0
IPIIPI00007826   IPI00619907   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULZ0
IntAct (EBI)Q9ULZ0
FunCoupENSG00000205457
BioGRIDTP53TG3C
STRING (EMBL)TP53TG3C
ZODIACTP53TG3C
Ontologies - Pathways
QuickGOQ9ULZ0
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkTP53TG3C
Atlas of Cancer Signalling NetworkTP53TG3C
Wikipedia pathwaysTP53TG3C
Orthology - Evolution
OrthoDB653550
GeneTree (enSembl)ENSG00000205457
Phylogenetic Trees/Animal Genes : TreeFamTP53TG3C
HOVERGENQ9ULZ0
HOGENOMQ9ULZ0
Homologs : HomoloGeneTP53TG3C
Homology/Alignments : Family Browser (UCSC)TP53TG3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTP53TG3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TP53TG3C
dbVarTP53TG3C
ClinVarTP53TG3C
1000_GenomesTP53TG3C 
Exome Variant ServerTP53TG3C
ExAC (Exome Aggregation Consortium)TP53TG3C (select the gene name)
Genetic variants : HAPMAP653550
Genomic Variants (DGV)TP53TG3C [DGVbeta]
DECIPHER (Syndromes)16:33205585-33207624  ENSG00000205457
CONAN: Copy Number AnalysisTP53TG3C 
Mutations
ICGC Data PortalTP53TG3C 
TCGA Data PortalTP53TG3C 
Broad Tumor PortalTP53TG3C
OASIS PortalTP53TG3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTP53TG3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTP53TG3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TP53TG3C
DgiDB (Drug Gene Interaction Database)TP53TG3C
DoCM (Curated mutations)TP53TG3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TP53TG3C (select a term)
intoGenTP53TG3C
Cancer3DTP53TG3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTP53TG3C
Genetic Testing Registry TP53TG3C
NextProtQ9ULZ0 [Medical]
TSGene653550
GENETestsTP53TG3C
Huge Navigator TP53TG3C [HugePedia]
snp3D : Map Gene to Disease653550
BioCentury BCIQTP53TG3C
ClinGenTP53TG3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653550
Clinical trialTP53TG3C
Miscellaneous
canSAR (ICR)TP53TG3C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTP53TG3C
EVEXTP53TG3C
GoPubMedTP53TG3C
iHOPTP53TG3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:22 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.