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TP53TG5 (TP53 target 5)

Identity

Alias_namesC20orf10
chromosome 20 open reading frame 10
Alias_symbol (synonym)CLG01
dJ453C12.5
Other alias
HGNC (Hugo) TP53TG5
LocusID (NCBI) 27296
Atlas_Id 75069
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45373880 and ends at 45378317 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TP53TG5   15856
Cards
Entrez_Gene (NCBI)TP53TG5  27296  TP53 target 5
AliasesC20orf10; CLG01
GeneCards (Weizmann)TP53TG5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:45373880-45378317 [Contig_View]  TP53TG5 [Vega]
TCGA cBioPortalTP53TG5
AceView (NCBI)TP53TG5
Genatlas (Paris)TP53TG5
WikiGenes27296
SOURCE (Princeton)TP53TG5
Genetics Home Reference (NIH)TP53TG5
Genomic and cartography
GoldenPath hg38 (UCSC)TP53TG5  -     chr20:45373880-45378317 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TP53TG5  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblTP53TG5 - 20q13.12 [CytoView hg19]  TP53TG5 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBITP53TG5 [Mapview hg19]  TP53TG5 [Mapview hg38]
OMIM617316   
Gene and transcription
Genbank (Entrez)AB017802 AK295308 BC036785
RefSeq transcript (Entrez)NM_014477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TP53TG5
Cluster EST : UnigeneHs.710271 [ NCBI ]
CGAP (NCI)Hs.710271
Gene ExpressionTP53TG5 [ NCBI-GEO ]   TP53TG5 [ EBI - ARRAY_EXPRESS ]   TP53TG5 [ SEEK ]   TP53TG5 [ MEM ]
Gene Expression Viewer (FireBrowse)TP53TG5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27296
GTEX Portal (Tissue expression)TP53TG5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2B4
Splice isoforms : SwissVarQ9Y2B4
PhosPhoSitePlusQ9Y2B4
Domains : Interpro (EBI)TP53TG5   
Domain families : Pfam (Sanger)TP53IP5 (PF15331)   
Domain families : Pfam (NCBI)pfam15331   
Conserved Domain (NCBI)TP53TG5
DMDM Disease mutations27296
Blocks (Seattle)TP53TG5
SuperfamilyQ9Y2B4
Peptide AtlasQ9Y2B4
HPRD12733
IPIIPI00004474   IPI01011981   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2B4
IntAct (EBI)Q9Y2B4
BioGRIDTP53TG5
STRING (EMBL)TP53TG5
ZODIACTP53TG5
Ontologies - Pathways
QuickGOQ9Y2B4
Ontology : AmiGOmolecular_function  nucleus  cytoplasm  negative regulation of cell growth  intracellular signal transduction  
Ontology : EGO-EBImolecular_function  nucleus  cytoplasm  negative regulation of cell growth  intracellular signal transduction  
NDEx NetworkTP53TG5
Atlas of Cancer Signalling NetworkTP53TG5
Wikipedia pathwaysTP53TG5
Orthology - Evolution
OrthoDB27296
Phylogenetic Trees/Animal Genes : TreeFamTP53TG5
HOVERGENQ9Y2B4
HOGENOMQ9Y2B4
Homologs : HomoloGeneTP53TG5
Homology/Alignments : Family Browser (UCSC)TP53TG5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTP53TG5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TP53TG5
dbVarTP53TG5
ClinVarTP53TG5
1000_GenomesTP53TG5 
Exome Variant ServerTP53TG5
ExAC (Exome Aggregation Consortium)TP53TG5 (select the gene name)
Genetic variants : HAPMAP27296
Genomic Variants (DGV)TP53TG5 [DGVbeta]
DECIPHERTP53TG5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTP53TG5 
Mutations
ICGC Data PortalTP53TG5 
TCGA Data PortalTP53TG5 
Broad Tumor PortalTP53TG5
OASIS PortalTP53TG5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTP53TG5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTP53TG5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TP53TG5
DgiDB (Drug Gene Interaction Database)TP53TG5
DoCM (Curated mutations)TP53TG5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TP53TG5 (select a term)
intoGenTP53TG5
Cancer3DTP53TG5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617316   
Orphanet
MedgenTP53TG5
Genetic Testing Registry TP53TG5
NextProtQ9Y2B4 [Medical]
TSGene27296
GENETestsTP53TG5
Target ValidationTP53TG5
Huge Navigator TP53TG5 [HugePedia]
snp3D : Map Gene to Disease27296
BioCentury BCIQTP53TG5
ClinGenTP53TG5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27296
Chemical/Pharm GKB GenePA25639
Clinical trialTP53TG5
Miscellaneous
canSAR (ICR)TP53TG5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTP53TG5
EVEXTP53TG5
GoPubMedTP53TG5
iHOPTP53TG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:18 CEST 2017

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