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TP73-AS1 (TP73 antisense RNA 1)

Identity

Alias_namesKIAA0495
KIAA0495
Alias_symbol (synonym)PDAM
Other alias
HGNC (Hugo) TP73-AS1
LocusID (NCBI) 57212
Atlas_Id 52221
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3652550 and ends at 3663886 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PHF20 (20q11.22) / TP73-AS1 (1p36.32)TP73-AS1 (1p36.32) / MUM1 (19p13.3)TP73-AS1 (1p36.32) / RABGEF1 (7q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TP73-AS1   29052
Cards
Entrez_Gene (NCBI)TP73-AS1  57212  TP73 antisense RNA 1
AliasesKIAA0495; PDAM
GeneCards (Weizmann)TP73-AS1
Ensembl hg19 (Hinxton)ENSG00000227372 [Gene_View]  chr1:3652550-3663886 [Contig_View]  TP73-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000227372 [Gene_View]  chr1:3652550-3663886 [Contig_View]  TP73-AS1 [Vega]
ICGC DataPortalENSG00000227372
TCGA cBioPortalTP73-AS1
AceView (NCBI)TP73-AS1
Genatlas (Paris)TP73-AS1
WikiGenes57212
SOURCE (Princeton)TP73-AS1
Genetics Home Reference (NIH)TP73-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)TP73-AS1  -     chr1:3652550-3663886 -  1p36.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TP73-AS1  -     1p36.32   [Description]    (hg38-Dec_2013)
EnsemblTP73-AS1 - 1p36.32 [CytoView hg19]  TP73-AS1 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBITP73-AS1 [Mapview hg19]  TP73-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007964 AL133648 BC013872 BC035073 BC044603
RefSeq transcript (Entrez)NM_207306
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)TP73-AS1
Cluster EST : UnigeneHs.49658 [ NCBI ]
CGAP (NCI)Hs.49658
Alternative Splicing GalleryENSG00000227372
Gene ExpressionTP73-AS1 [ NCBI-GEO ]   TP73-AS1 [ EBI - ARRAY_EXPRESS ]   TP73-AS1 [ SEEK ]   TP73-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TP73-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57212
GTEX Portal (Tissue expression)TP73-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UF72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UF72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UF72
Splice isoforms : SwissVarQ9UF72
PhosPhoSitePlusQ9UF72
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TP73-AS1
DMDM Disease mutations57212
Blocks (Seattle)TP73-AS1
SuperfamilyQ9UF72
Human Protein AtlasENSG00000227372
Peptide AtlasQ9UF72
HPRD13803
IPIIPI00006018   
Protein Interaction databases
DIP (DOE-UCLA)Q9UF72
IntAct (EBI)Q9UF72
FunCoupENSG00000227372
BioGRIDTP73-AS1
STRING (EMBL)TP73-AS1
ZODIACTP73-AS1
Ontologies - Pathways
QuickGOQ9UF72
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkTP73-AS1
Atlas of Cancer Signalling NetworkTP73-AS1
Wikipedia pathwaysTP73-AS1
Orthology - Evolution
OrthoDB57212
GeneTree (enSembl)ENSG00000227372
Phylogenetic Trees/Animal Genes : TreeFamTP73-AS1
HOVERGENQ9UF72
HOGENOMQ9UF72
Homologs : HomoloGeneTP73-AS1
Homology/Alignments : Family Browser (UCSC)TP73-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTP73-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TP73-AS1
dbVarTP73-AS1
ClinVarTP73-AS1
1000_GenomesTP73-AS1 
Exome Variant ServerTP73-AS1
ExAC (Exome Aggregation Consortium)TP73-AS1 (select the gene name)
Genetic variants : HAPMAP57212
Genomic Variants (DGV)TP73-AS1 [DGVbeta]
DECIPHER (Syndromes)1:3652550-3663886  ENSG00000227372
CONAN: Copy Number AnalysisTP73-AS1 
Mutations
ICGC Data PortalTP73-AS1 
TCGA Data PortalTP73-AS1 
Broad Tumor PortalTP73-AS1
OASIS PortalTP73-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTP73-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TP73-AS1
DgiDB (Drug Gene Interaction Database)TP73-AS1
DoCM (Curated mutations)TP73-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TP73-AS1 (select a term)
intoGenTP73-AS1
Cancer3DTP73-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTP73-AS1
Genetic Testing Registry TP73-AS1
NextProtQ9UF72 [Medical]
TSGene57212
GENETestsTP73-AS1
Huge Navigator TP73-AS1 [HugePedia]
snp3D : Map Gene to Disease57212
BioCentury BCIQTP73-AS1
ClinGenTP73-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57212
Chemical/Pharm GKB GenePA165751441
Clinical trialTP73-AS1
Miscellaneous
canSAR (ICR)TP73-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTP73-AS1
EVEXTP73-AS1
GoPubMedTP73-AS1
iHOPTP73-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:09 CEST 2017

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