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TPBGL (trophoblast glycoprotein like)

Identity

Alias (NCBI)-
HGNC (Hugo) TPBGL
LocusID (NCBI) 100507050
Atlas_Id 75070
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 75240774 and ends at 75243704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TPBGL   44159
Cards
Entrez_Gene (NCBI)TPBGL    trophoblast glycoprotein like
Aliases
GeneCards (Weizmann)TPBGL
Ensembl hg19 (Hinxton)ENSG00000261594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261594 [Gene_View]  ENSG00000261594 [Sequence]  chr11:75240774-75243704 [Contig_View]  TPBGL [Vega]
ICGC DataPortalENSG00000261594
TCGA cBioPortalTPBGL
AceView (NCBI)TPBGL
Genatlas (Paris)TPBGL
SOURCE (Princeton)TPBGL
Genetics Home Reference (NIH)TPBGL
Genomic and cartography
GoldenPath hg38 (UCSC)TPBGL  -     chr11:75240774-75243704 +  11q13.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPBGL  -     11q13.4   [Description]    (hg19-Feb_2009)
GoldenPathTPBGL - 11q13.4 [CytoView hg19]  TPBGL - 11q13.4 [CytoView hg38]
ImmunoBaseENSG00000261594
Genome Data Viewer NCBITPBGL [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC007804 N54218
RefSeq transcript (Entrez)NM_001195528
Consensus coding sequences : CCDS (NCBI)TPBGL
Gene ExpressionTPBGL [ NCBI-GEO ]   TPBGL [ EBI - ARRAY_EXPRESS ]   TPBGL [ SEEK ]   TPBGL [ MEM ]
Gene Expression Viewer (FireBrowse)TPBGL [ Firebrowse - Broad ]
GenevisibleExpression of TPBGL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507050
GTEX Portal (Tissue expression)TPBGL
Human Protein AtlasENSG00000261594-TPBGL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DKB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DKB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DKB5
PhosPhoSitePlusP0DKB5
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR_dom_sf   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)TPBGL
SuperfamilyP0DKB5
AlphaFold pdb e-kbP0DKB5   
Human Protein Atlas [tissue]ENSG00000261594-TPBGL [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0DKB5
IntAct (EBI)P0DKB5
BioGRIDTPBGL
STRING (EMBL)TPBGL
ZODIACTPBGL
Ontologies - Pathways
QuickGOP0DKB5
Ontology : AmiGOplasma membrane  membrane  integral component of membrane  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIplasma membrane  membrane  integral component of membrane  negative regulation of canonical Wnt signaling pathway  
NDEx NetworkTPBGL
Atlas of Cancer Signalling NetworkTPBGL
Wikipedia pathwaysTPBGL
Orthology - Evolution
OrthoDB100507050
GeneTree (enSembl)ENSG00000261594
Phylogenetic Trees/Animal Genes : TreeFamTPBGL
Homologs : HomoloGeneTPBGL
Homology/Alignments : Family Browser (UCSC)TPBGL
Gene fusions - Rearrangements
Fusion : QuiverTPBGL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPBGL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPBGL
dbVarTPBGL
ClinVarTPBGL
MonarchTPBGL
1000_GenomesTPBGL 
Exome Variant ServerTPBGL
GNOMAD BrowserENSG00000261594
Varsome BrowserTPBGL
ACMGTPBGL variants
VarityP0DKB5
Genomic Variants (DGV)TPBGL [DGVbeta]
DECIPHERTPBGL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPBGL 
Mutations
ICGC Data PortalTPBGL 
TCGA Data PortalTPBGL 
Broad Tumor PortalTPBGL
OASIS PortalTPBGL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPBGL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTPBGL
Mutations and Diseases : HGMDTPBGL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTPBGL
DgiDB (Drug Gene Interaction Database)TPBGL
DoCM (Curated mutations)TPBGL
CIViC (Clinical Interpretations of Variants in Cancer)TPBGL
Cancer3DTPBGL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTPBGL
MedgenTPBGL
Genetic Testing Registry TPBGL
NextProtP0DKB5 [Medical]
GENETestsTPBGL
Target ValidationTPBGL
Huge Navigator TPBGL [HugePedia]
ClinGenTPBGL
Clinical trials, drugs, therapy
MyCancerGenomeTPBGL
Protein Interactions : CTDTPBGL
Pharm GKB GenePA166049109
PharosP0DKB5
Clinical trialTPBGL
Miscellaneous
canSAR (ICR)TPBGL
HarmonizomeTPBGL
DataMed IndexTPBGL
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPBGL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:36 CEST 2021

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