Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TPBGL (trophoblast glycoprotein-like)

Identity

Other alias-
HGNC (Hugo) TPBGL
LocusID (NCBI) 100507050
Atlas_Id 75070
Location 11q13.4  [Link to chromosome band 11q13]
Location_base_pair Starts at 74951950 and ends at 74954749 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPBGL   44159
Cards
Entrez_Gene (NCBI)TPBGL  100507050  trophoblast glycoprotein-like
Aliases
GeneCards (Weizmann)TPBGL
Ensembl hg19 (Hinxton)ENSG00000261594 [Gene_View]  chr11:74951950-74954749 [Contig_View]  TPBGL [Vega]
Ensembl hg38 (Hinxton)ENSG00000261594 [Gene_View]  chr11:74951950-74954749 [Contig_View]  TPBGL [Vega]
ICGC DataPortalENSG00000261594
TCGA cBioPortalTPBGL
AceView (NCBI)TPBGL
Genatlas (Paris)TPBGL
WikiGenes100507050
SOURCE (Princeton)TPBGL
Genetics Home Reference (NIH)TPBGL
Genomic and cartography
GoldenPath hg19 (UCSC)TPBGL  -     chr11:74951950-74954749 +  11q13.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TPBGL  -     11q13.4   [Description]    (hg38-Dec_2013)
EnsemblTPBGL - 11q13.4 [CytoView hg19]  TPBGL - 11q13.4 [CytoView hg38]
Mapping of homologs : NCBITPBGL [Mapview hg19]  TPBGL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC007804 N54218
RefSeq transcript (Entrez)NM_001195528
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)TPBGL
Cluster EST : UnigeneHs.744257 [ NCBI ]
CGAP (NCI)Hs.744257
Alternative Splicing GalleryENSG00000261594
Gene ExpressionTPBGL [ NCBI-GEO ]   TPBGL [ EBI - ARRAY_EXPRESS ]   TPBGL [ SEEK ]   TPBGL [ MEM ]
Gene Expression Viewer (FireBrowse)TPBGL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507050
GTEX Portal (Tissue expression)TPBGL
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DKB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DKB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DKB5
Splice isoforms : SwissVarP0DKB5
PhosPhoSitePlusP0DKB5
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)TPBGL
DMDM Disease mutations100507050
Blocks (Seattle)TPBGL
SuperfamilyP0DKB5
Human Protein AtlasENSG00000261594
Peptide AtlasP0DKB5
Protein Interaction databases
DIP (DOE-UCLA)P0DKB5
IntAct (EBI)P0DKB5
FunCoupENSG00000261594
BioGRIDTPBGL
STRING (EMBL)TPBGL
ZODIACTPBGL
Ontologies - Pathways
QuickGOP0DKB5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTPBGL
Atlas of Cancer Signalling NetworkTPBGL
Wikipedia pathwaysTPBGL
Orthology - Evolution
OrthoDB100507050
GeneTree (enSembl)ENSG00000261594
Phylogenetic Trees/Animal Genes : TreeFamTPBGL
HOVERGENP0DKB5
HOGENOMP0DKB5
Homologs : HomoloGeneTPBGL
Homology/Alignments : Family Browser (UCSC)TPBGL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPBGL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPBGL
dbVarTPBGL
ClinVarTPBGL
1000_GenomesTPBGL 
Exome Variant ServerTPBGL
ExAC (Exome Aggregation Consortium)TPBGL (select the gene name)
Genetic variants : HAPMAP100507050
Genomic Variants (DGV)TPBGL [DGVbeta]
DECIPHER (Syndromes)11:74951950-74954749  ENSG00000261594
CONAN: Copy Number AnalysisTPBGL 
Mutations
ICGC Data PortalTPBGL 
TCGA Data PortalTPBGL 
Broad Tumor PortalTPBGL
OASIS PortalTPBGL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTPBGL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPBGL
DgiDB (Drug Gene Interaction Database)TPBGL
DoCM (Curated mutations)TPBGL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPBGL (select a term)
intoGenTPBGL
Cancer3DTPBGL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTPBGL
Genetic Testing Registry TPBGL
NextProtP0DKB5 [Medical]
TSGene100507050
GENETestsTPBGL
Huge Navigator TPBGL [HugePedia]
snp3D : Map Gene to Disease100507050
BioCentury BCIQTPBGL
ClinGenTPBGL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507050
Clinical trialTPBGL
Miscellaneous
canSAR (ICR)TPBGL (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPBGL
EVEXTPBGL
GoPubMedTPBGL
iHOPTPBGL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:23 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.