Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TPD52L1 (TPD52 like 1)

Identity

Alias (NCBI)D53
TPD53
HGNC (Hugo) TPD52L1
HGNC Alias symbD53
hD53
TPD53
HGNC Previous nametumor protein D52 like 1
LocusID (NCBI) 7164
Atlas_Id 42677
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 125153773 and ends at 125264406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HDDC2 (6q22.31) / TPD52L1 (6q22.31)TPD52L1 (6q22.31) / PARVA (11p15.3)TPD52L1 (6q22.31) / SAMD3 (6q23.1)
TPD52L1 (6q22.31) / TRMT11 (6q22.32)HDDC2 6q22.31 / TPD52L1 6q22.31TPD52L1 6q22.31 / SAMD3 6q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TPD52L1   12006
Cards
Entrez_Gene (NCBI)TPD52L1    TPD52 like 1
AliasesD53; TPD53
GeneCards (Weizmann)TPD52L1
Ensembl hg19 (Hinxton)ENSG00000111907 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111907 [Gene_View]  ENSG00000111907 [Sequence]  chr6:125153773-125264406 [Contig_View]  TPD52L1 [Vega]
ICGC DataPortalENSG00000111907
TCGA cBioPortalTPD52L1
AceView (NCBI)TPD52L1
Genatlas (Paris)TPD52L1
SOURCE (Princeton)TPD52L1
Genetics Home Reference (NIH)TPD52L1
Genomic and cartography
GoldenPath hg38 (UCSC)TPD52L1  -     chr6:125153773-125264406 +  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPD52L1  -     6q22.31   [Description]    (hg19-Feb_2009)
GoldenPathTPD52L1 - 6q22.31 [CytoView hg19]  TPD52L1 - 6q22.31 [CytoView hg38]
ImmunoBaseENSG00000111907
Genome Data Viewer NCBITPD52L1 [Mapview hg19]  
OMIM604069   
Gene and transcription
Genbank (Entrez)AF004427 AF208012 AI222450 AK090516 AK124817
RefSeq transcript (Entrez)NM_001003395 NM_001003396 NM_001003397 NM_001292026 NM_001300994 NM_001318903 NM_001318907 NM_003287
Consensus coding sequences : CCDS (NCBI)TPD52L1
Gene ExpressionTPD52L1 [ NCBI-GEO ]   TPD52L1 [ EBI - ARRAY_EXPRESS ]   TPD52L1 [ SEEK ]   TPD52L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPD52L1 [ Firebrowse - Broad ]
GenevisibleExpression of TPD52L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7164
GTEX Portal (Tissue expression)TPD52L1
Human Protein AtlasENSG00000111907-TPD52L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPD52L1
Human Protein Atlas [tissue]ENSG00000111907-TPD52L1 [tissue]
HPRD07236
Protein Interaction databases
BioGRIDTPD52L1
STRING (EMBL)TPD52L1
ZODIACTPD52L1
Ontologies - Pathways
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPD52L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:00 CEST 2021

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