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TPD52L2 (tumor protein D52 like 2)

Identity

Alias_namestumor protein D52-like 2
Alias_symbol (synonym)D54
hD54
Other aliasTPD54
HGNC (Hugo) TPD52L2
LocusID (NCBI) 7165
Atlas_Id 42678
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63865228 and ends at 63891545 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJC5 (20q13.33) / TPD52L2 (20q13.33)MALAT1 (11q13.1) / TPD52L2 (20q13.33)TPD52L2 (20q13.33) / DNAJC5 (20q13.33)
TPD52L2 (20q13.33) / PDZRN4 (12q12)TPD52L2 (20q13.33) / TPD52L2 (20q13.33)TPD52L2 (20q13.33) / XRCC4 (5q14.2)
TPD52L2 (20q13.33) / ZGPAT (20q13.33)DNAJC5 20q13.33 / TPD52L2 20q13.33TPD52L2 20q13.33 / PDZRN4 12q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPD52L2   12007
Cards
Entrez_Gene (NCBI)TPD52L2  7165  tumor protein D52 like 2
AliasesD54; TPD54
GeneCards (Weizmann)TPD52L2
Ensembl hg19 (Hinxton)ENSG00000101150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101150 [Gene_View]  chr20:63865228-63891545 [Contig_View]  TPD52L2 [Vega]
ICGC DataPortalENSG00000101150
TCGA cBioPortalTPD52L2
AceView (NCBI)TPD52L2
Genatlas (Paris)TPD52L2
WikiGenes7165
SOURCE (Princeton)TPD52L2
Genetics Home Reference (NIH)TPD52L2
Genomic and cartography
GoldenPath hg38 (UCSC)TPD52L2  -     chr20:63865228-63891545 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPD52L2  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblTPD52L2 - 20q13.33 [CytoView hg19]  TPD52L2 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBITPD52L2 [Mapview hg19]  TPD52L2 [Mapview hg38]
OMIM603747   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001243891 NM_001243892 NM_001243894 NM_001243895 NM_003288 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPD52L2
Cluster EST : UnigeneHs.473296 [ NCBI ]
CGAP (NCI)Hs.473296
Alternative Splicing GalleryENSG00000101150
Gene ExpressionTPD52L2 [ NCBI-GEO ]   TPD52L2 [ EBI - ARRAY_EXPRESS ]   TPD52L2 [ SEEK ]   TPD52L2 [ MEM ]
Gene Expression Viewer (FireBrowse)TPD52L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7165
GTEX Portal (Tissue expression)TPD52L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43399   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43399  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43399
Splice isoforms : SwissVarO43399
PhosPhoSitePlusO43399
Domains : Interpro (EBI)TPD52   
Domain families : Pfam (Sanger)TPD52 (PF04201)   
Domain families : Pfam (NCBI)pfam04201   
Conserved Domain (NCBI)TPD52L2
DMDM Disease mutations7165
Blocks (Seattle)TPD52L2
SuperfamilyO43399
Human Protein AtlasENSG00000101150
Peptide AtlasO43399
HPRD11947
IPIIPI00306825   IPI00221178   IPI00399266   IPI00399268   IPI00743469   IPI00399265   IPI00399267   
Protein Interaction databases
DIP (DOE-UCLA)O43399
IntAct (EBI)O43399
FunCoupENSG00000101150
BioGRIDTPD52L2
STRING (EMBL)TPD52L2
ZODIACTPD52L2
Ontologies - Pathways
QuickGOO43399
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkTPD52L2
Atlas of Cancer Signalling NetworkTPD52L2
Wikipedia pathwaysTPD52L2
Orthology - Evolution
OrthoDB7165
GeneTree (enSembl)ENSG00000101150
Phylogenetic Trees/Animal Genes : TreeFamTPD52L2
HOVERGENO43399
HOGENOMO43399
Homologs : HomoloGeneTPD52L2
Homology/Alignments : Family Browser (UCSC)TPD52L2
Gene fusions - Rearrangements
Fusion : MitelmanDNAJC5/TPD52L2 [20q13.33/20q13.33]  [t(20;20)(q13;q13)]  
Fusion : MitelmanTPD52L2/PDZRN4 [20q13.33/12q12]  [t(12;20)(q12;q13)]  
Fusion: TCGADNAJC5 20q13.33 TPD52L2 20q13.33 OV
Fusion: TCGATPD52L2 20q13.33 PDZRN4 12q12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPD52L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPD52L2
dbVarTPD52L2
ClinVarTPD52L2
1000_GenomesTPD52L2 
Exome Variant ServerTPD52L2
ExAC (Exome Aggregation Consortium)TPD52L2 (select the gene name)
Genetic variants : HAPMAP7165
Genomic Variants (DGV)TPD52L2 [DGVbeta]
DECIPHERTPD52L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPD52L2 
Mutations
ICGC Data PortalTPD52L2 
TCGA Data PortalTPD52L2 
Broad Tumor PortalTPD52L2
OASIS PortalTPD52L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPD52L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPD52L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPD52L2
DgiDB (Drug Gene Interaction Database)TPD52L2
DoCM (Curated mutations)TPD52L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPD52L2 (select a term)
intoGenTPD52L2
Cancer3DTPD52L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603747   
Orphanet
MedgenTPD52L2
Genetic Testing Registry TPD52L2
NextProtO43399 [Medical]
TSGene7165
GENETestsTPD52L2
Huge Navigator TPD52L2 [HugePedia]
snp3D : Map Gene to Disease7165
BioCentury BCIQTPD52L2
ClinGenTPD52L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7165
Chemical/Pharm GKB GenePA36688
Clinical trialTPD52L2
Miscellaneous
canSAR (ICR)TPD52L2 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPD52L2
EVEXTPD52L2
GoPubMedTPD52L2
iHOPTPD52L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:41:53 CEST 2017

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