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TPD52L2 (TPD52 like 2)

Identity

Alias (NCBI)D54
TPD54
HGNC (Hugo) TPD52L2
HGNC Alias symbD54
hD54
TPD54
HGNC Previous nametumor protein D52-like 2
 tumor protein D52 like 2
LocusID (NCBI) 7165
Atlas_Id 42678
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63865270 and ends at 63891537 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJC5 (20q13.33) / TPD52L2 (20q13.33)MALAT1 (11q13.1) / TPD52L2 (20q13.33)TPD52L2 (20q13.33) / DNAJC5 (20q13.33)
TPD52L2 (20q13.33) / PDZRN4 (12q12)TPD52L2 (20q13.33) / TPD52L2 (20q13.33)TPD52L2 (20q13.33) / XRCC4 (5q14.2)
TPD52L2 (20q13.33) / ZGPAT (20q13.33)DNAJC5 20q13.33 / TPD52L2 20q13.33TPD52L2 20q13.33 / PDZRN4 12q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TPD52L2   12007
Cards
Entrez_Gene (NCBI)TPD52L2    TPD52 like 2
AliasesD54; TPD54
GeneCards (Weizmann)TPD52L2
Ensembl hg19 (Hinxton)ENSG00000101150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101150 [Gene_View]  ENSG00000101150 [Sequence]  chr20:63865270-63891537 [Contig_View]  TPD52L2 [Vega]
ICGC DataPortalENSG00000101150
TCGA cBioPortalTPD52L2
AceView (NCBI)TPD52L2
Genatlas (Paris)TPD52L2
SOURCE (Princeton)TPD52L2
Genetics Home Reference (NIH)TPD52L2
Genomic and cartography
GoldenPath hg38 (UCSC)TPD52L2  -     chr20:63865270-63891537 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPD52L2  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathTPD52L2 - 20q13.33 [CytoView hg19]  TPD52L2 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000101150
Genome Data Viewer NCBITPD52L2 [Mapview hg19]  
OMIM603747   
Gene and transcription
Genbank (Entrez)AB062396 AF004429 AF004430 AK055068 AK125709
RefSeq transcript (Entrez)NM_001243891 NM_001243892 NM_001243894 NM_001243895 NM_003288 NM_199359 NM_199360 NM_199361 NM_199362 NM_199363
Consensus coding sequences : CCDS (NCBI)TPD52L2
Gene ExpressionTPD52L2 [ NCBI-GEO ]   TPD52L2 [ EBI - ARRAY_EXPRESS ]   TPD52L2 [ SEEK ]   TPD52L2 [ MEM ]
Gene Expression Viewer (FireBrowse)TPD52L2 [ Firebrowse - Broad ]
GenevisibleExpression of TPD52L2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7165
GTEX Portal (Tissue expression)TPD52L2
Human Protein AtlasENSG00000101150-TPD52L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43399   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43399  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43399
PhosPhoSitePlusO43399
Domains : Interpro (EBI)6hp_glycosidase-like_sf    TPD52   
Domain families : Pfam (Sanger)TPD52 (PF04201)   
Domain families : Pfam (NCBI)pfam04201   
Conserved Domain (NCBI)TPD52L2
SuperfamilyO43399
AlphaFold pdb e-kbO43399   
Human Protein Atlas [tissue]ENSG00000101150-TPD52L2 [tissue]
HPRD11947
Protein Interaction databases
DIP (DOE-UCLA)O43399
IntAct (EBI)O43399
BioGRIDTPD52L2
STRING (EMBL)TPD52L2
ZODIACTPD52L2
Ontologies - Pathways
QuickGOO43399
Ontology : AmiGORNA binding  protein binding  cytoplasm  carbohydrate metabolic process  
Ontology : EGO-EBIRNA binding  protein binding  cytoplasm  carbohydrate metabolic process  
NDEx NetworkTPD52L2
Atlas of Cancer Signalling NetworkTPD52L2
Wikipedia pathwaysTPD52L2
Orthology - Evolution
OrthoDB7165
GeneTree (enSembl)ENSG00000101150
Phylogenetic Trees/Animal Genes : TreeFamTPD52L2
Homologs : HomoloGeneTPD52L2
Homology/Alignments : Family Browser (UCSC)TPD52L2
Gene fusions - Rearrangements
Fusion : MitelmanDNAJC5/TPD52L2 [20q13.33/20q13.33]  
Fusion : MitelmanTPD52L2/PDZRN4 [20q13.33/12q12]  
Fusion : QuiverTPD52L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPD52L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPD52L2
dbVarTPD52L2
ClinVarTPD52L2
MonarchTPD52L2
1000_GenomesTPD52L2 
Exome Variant ServerTPD52L2
GNOMAD BrowserENSG00000101150
Varsome BrowserTPD52L2
ACMGTPD52L2 variants
VarityO43399
Genomic Variants (DGV)TPD52L2 [DGVbeta]
DECIPHERTPD52L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPD52L2 
Mutations
ICGC Data PortalTPD52L2 
TCGA Data PortalTPD52L2 
Broad Tumor PortalTPD52L2
OASIS PortalTPD52L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPD52L2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTPD52L2
Mutations and Diseases : HGMDTPD52L2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTPD52L2
DgiDB (Drug Gene Interaction Database)TPD52L2
DoCM (Curated mutations)TPD52L2
CIViC (Clinical Interpretations of Variants in Cancer)TPD52L2
Cancer3DTPD52L2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603747   
Orphanet
DisGeNETTPD52L2
MedgenTPD52L2
Genetic Testing Registry TPD52L2
NextProtO43399 [Medical]
GENETestsTPD52L2
Target ValidationTPD52L2
Huge Navigator TPD52L2 [HugePedia]
ClinGenTPD52L2
Clinical trials, drugs, therapy
MyCancerGenomeTPD52L2
Protein Interactions : CTDTPD52L2
Pharm GKB GenePA36688
PharosO43399
Clinical trialTPD52L2
Miscellaneous
canSAR (ICR)TPD52L2
HarmonizomeTPD52L2
DataMed IndexTPD52L2
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPD52L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:00 CEST 2021

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