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TPD52L3 (tumor protein D52-like 3)

Identity

Alias_namestumor protein D52-like 3
Alias_symbol (synonym)NYD-SP25
Other aliasNYDSP25
hD55
HGNC (Hugo) TPD52L3
LocusID (NCBI) 89882
Atlas_Id 43095
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 6328349 and ends at 6331900 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KANK1 (9p24.3) / TPD52L3 (9p24.1)KANK1 9p24.3 / TPD52L3 9p24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPD52L3   23382
Cards
Entrez_Gene (NCBI)TPD52L3  89882  tumor protein D52-like 3
AliasesNYDSP25; hD55
GeneCards (Weizmann)TPD52L3
Ensembl hg19 (Hinxton)ENSG00000170777 [Gene_View]  chr9:6328349-6331900 [Contig_View]  TPD52L3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170777 [Gene_View]  chr9:6328349-6331900 [Contig_View]  TPD52L3 [Vega]
ICGC DataPortalENSG00000170777
TCGA cBioPortalTPD52L3
AceView (NCBI)TPD52L3
Genatlas (Paris)TPD52L3
WikiGenes89882
SOURCE (Princeton)TPD52L3
Genetics Home Reference (NIH)TPD52L3
Genomic and cartography
GoldenPath hg19 (UCSC)TPD52L3  -     chr9:6328349-6331900 +  9p24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TPD52L3  -     9p24.1   [Description]    (hg38-Dec_2013)
EnsemblTPD52L3 - 9p24.1 [CytoView hg19]  TPD52L3 - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBITPD52L3 [Mapview hg19]  TPD52L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI032390 AK057479 AY032877 BC017589 BC033792
RefSeq transcript (Entrez)NM_001001874 NM_001001875 NM_033516
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)TPD52L3
Cluster EST : UnigeneHs.351815 [ NCBI ]
CGAP (NCI)Hs.351815
Alternative Splicing GalleryENSG00000170777
Gene ExpressionTPD52L3 [ NCBI-GEO ]   TPD52L3 [ EBI - ARRAY_EXPRESS ]   TPD52L3 [ SEEK ]   TPD52L3 [ MEM ]
Gene Expression Viewer (FireBrowse)TPD52L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89882
GTEX Portal (Tissue expression)TPD52L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J77
Splice isoforms : SwissVarQ96J77
PhosPhoSitePlusQ96J77
Domains : Interpro (EBI)TPD52   
Domain families : Pfam (Sanger)TPD52 (PF04201)   
Domain families : Pfam (NCBI)pfam04201   
Conserved Domain (NCBI)TPD52L3
DMDM Disease mutations89882
Blocks (Seattle)TPD52L3
SuperfamilyQ96J77
Human Protein AtlasENSG00000170777
Peptide AtlasQ96J77
HPRD14864
IPIIPI00783210   IPI00384284   IPI00645582   IPI00973314   
Protein Interaction databases
DIP (DOE-UCLA)Q96J77
IntAct (EBI)Q96J77
FunCoupENSG00000170777
BioGRIDTPD52L3
STRING (EMBL)TPD52L3
ZODIACTPD52L3
Ontologies - Pathways
QuickGOQ96J77
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTPD52L3
Atlas of Cancer Signalling NetworkTPD52L3
Wikipedia pathwaysTPD52L3
Orthology - Evolution
OrthoDB89882
GeneTree (enSembl)ENSG00000170777
Phylogenetic Trees/Animal Genes : TreeFamTPD52L3
HOVERGENQ96J77
HOGENOMQ96J77
Homologs : HomoloGeneTPD52L3
Homology/Alignments : Family Browser (UCSC)TPD52L3
Gene fusions - Rearrangements
Fusion : MitelmanKANK1/TPD52L3 [9p24.3/9p24.1]  [t(9;9)(p24;p24)]  
Fusion: TCGAKANK1 9p24.3 TPD52L3 9p24.1 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPD52L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPD52L3
dbVarTPD52L3
ClinVarTPD52L3
1000_GenomesTPD52L3 
Exome Variant ServerTPD52L3
ExAC (Exome Aggregation Consortium)TPD52L3 (select the gene name)
Genetic variants : HAPMAP89882
Genomic Variants (DGV)TPD52L3 [DGVbeta]
DECIPHER (Syndromes)9:6328349-6331900  ENSG00000170777
CONAN: Copy Number AnalysisTPD52L3 
Mutations
ICGC Data PortalTPD52L3 
TCGA Data PortalTPD52L3 
Broad Tumor PortalTPD52L3
OASIS PortalTPD52L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPD52L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPD52L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPD52L3
DgiDB (Drug Gene Interaction Database)TPD52L3
DoCM (Curated mutations)TPD52L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPD52L3 (select a term)
intoGenTPD52L3
Cancer3DTPD52L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTPD52L3
Genetic Testing Registry TPD52L3
NextProtQ96J77 [Medical]
TSGene89882
GENETestsTPD52L3
Huge Navigator TPD52L3 [HugePedia]
snp3D : Map Gene to Disease89882
BioCentury BCIQTPD52L3
ClinGenTPD52L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89882
Chemical/Pharm GKB GenePA142670712
Clinical trialTPD52L3
Miscellaneous
canSAR (ICR)TPD52L3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPD52L3
EVEXTPD52L3
GoPubMedTPD52L3
iHOPTPD52L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:10 CEST 2017

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