Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TPD52L3 (TPD52 like 3)

Identity

Alias (NCBI)D55
NYDSP25
TPD55
hD55
HGNC (Hugo) TPD52L3
HGNC Alias symbNYD-SP25
D55
TPD55
HGNC Previous nametumor protein D52-like 3
 tumor protein D52 like 3
LocusID (NCBI) 89882
Atlas_Id 43095
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 6328375 and ends at 6330918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KANK1 (9p24.3) / TPD52L3 (9p24.1)KANK1 9p24.3 / TPD52L3 9p24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TPD52L3   23382
Cards
Entrez_Gene (NCBI)TPD52L3    TPD52 like 3
AliasesD55; NYDSP25; TPD55; hD55
GeneCards (Weizmann)TPD52L3
Ensembl hg19 (Hinxton)ENSG00000170777 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170777 [Gene_View]  ENSG00000170777 [Sequence]  chr9:6328375-6330918 [Contig_View]  TPD52L3 [Vega]
ICGC DataPortalENSG00000170777
TCGA cBioPortalTPD52L3
AceView (NCBI)TPD52L3
Genatlas (Paris)TPD52L3
SOURCE (Princeton)TPD52L3
Genetics Home Reference (NIH)TPD52L3
Genomic and cartography
GoldenPath hg38 (UCSC)TPD52L3  -     chr9:6328375-6330918 +  9p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPD52L3  -     9p24.1   [Description]    (hg19-Feb_2009)
GoldenPathTPD52L3 - 9p24.1 [CytoView hg19]  TPD52L3 - 9p24.1 [CytoView hg38]
ImmunoBaseENSG00000170777
Genome Data Viewer NCBITPD52L3 [Mapview hg19]  
OMIM617567   
Gene and transcription
Genbank (Entrez)AI032390 AK057479 AY032877 BC017589 BC033792
RefSeq transcript (Entrez)NM_001001874 NM_001001875 NM_033516
Consensus coding sequences : CCDS (NCBI)TPD52L3
Gene ExpressionTPD52L3 [ NCBI-GEO ]   TPD52L3 [ EBI - ARRAY_EXPRESS ]   TPD52L3 [ SEEK ]   TPD52L3 [ MEM ]
Gene Expression Viewer (FireBrowse)TPD52L3 [ Firebrowse - Broad ]
GenevisibleExpression of TPD52L3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89882
GTEX Portal (Tissue expression)TPD52L3
Human Protein AtlasENSG00000170777-TPD52L3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J77
PhosPhoSitePlusQ96J77
Domains : Interpro (EBI)TPD52   
Domain families : Pfam (Sanger)TPD52 (PF04201)   
Domain families : Pfam (NCBI)pfam04201   
Conserved Domain (NCBI)TPD52L3
SuperfamilyQ96J77
AlphaFold pdb e-kbQ96J77   
Human Protein Atlas [tissue]ENSG00000170777-TPD52L3 [tissue]
HPRD14864
Protein Interaction databases
DIP (DOE-UCLA)Q96J77
IntAct (EBI)Q96J77
BioGRIDTPD52L3
STRING (EMBL)TPD52L3
ZODIACTPD52L3
Ontologies - Pathways
QuickGOQ96J77
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkTPD52L3
Atlas of Cancer Signalling NetworkTPD52L3
Wikipedia pathwaysTPD52L3
Orthology - Evolution
OrthoDB89882
GeneTree (enSembl)ENSG00000170777
Phylogenetic Trees/Animal Genes : TreeFamTPD52L3
Homologs : HomoloGeneTPD52L3
Homology/Alignments : Family Browser (UCSC)TPD52L3
Gene fusions - Rearrangements
Fusion : MitelmanKANK1/TPD52L3 [9p24.3/9p24.1]  
Fusion : QuiverTPD52L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPD52L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPD52L3
dbVarTPD52L3
ClinVarTPD52L3
MonarchTPD52L3
1000_GenomesTPD52L3 
Exome Variant ServerTPD52L3
GNOMAD BrowserENSG00000170777
Varsome BrowserTPD52L3
ACMGTPD52L3 variants
VarityQ96J77
Genomic Variants (DGV)TPD52L3 [DGVbeta]
DECIPHERTPD52L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPD52L3 
Mutations
ICGC Data PortalTPD52L3 
TCGA Data PortalTPD52L3 
Broad Tumor PortalTPD52L3
OASIS PortalTPD52L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPD52L3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTPD52L3
Mutations and Diseases : HGMDTPD52L3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTPD52L3
DgiDB (Drug Gene Interaction Database)TPD52L3
DoCM (Curated mutations)TPD52L3
CIViC (Clinical Interpretations of Variants in Cancer)TPD52L3
Cancer3DTPD52L3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617567   
Orphanet
DisGeNETTPD52L3
MedgenTPD52L3
Genetic Testing Registry TPD52L3
NextProtQ96J77 [Medical]
GENETestsTPD52L3
Target ValidationTPD52L3
Huge Navigator TPD52L3 [HugePedia]
ClinGenTPD52L3
Clinical trials, drugs, therapy
MyCancerGenomeTPD52L3
Protein Interactions : CTDTPD52L3
Pharm GKB GenePA142670712
PharosQ96J77
Clinical trialTPD52L3
Miscellaneous
canSAR (ICR)TPD52L3
HarmonizomeTPD52L3
DataMed IndexTPD52L3
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPD52L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:00 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.