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TPGS1 (tubulin polyglutamylase complex subunit 1)

Identity

Alias_namesC19orf20
chromosome 19 open reading frame 20
Alias_symbol (synonym)GTRGEO22
PGs1
Other alias
HGNC (Hugo) TPGS1
LocusID (NCBI) 91978
Atlas_Id 75073
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 507497 and ends at 519654 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DBNDD1 (16q24.3) / TPGS1 (19p13.3)SBNO2 (19p13.3) / TPGS1 (19p13.3)TPGS1 (19p13.3) / CHRNA3 (15q25.1)
TPGS1 (19p13.3) / PRKACA (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPGS1   25058
Cards
Entrez_Gene (NCBI)TPGS1  91978  tubulin polyglutamylase complex subunit 1
AliasesC19orf20; GTRGEO22; PGs1
GeneCards (Weizmann)TPGS1
Ensembl hg19 (Hinxton)ENSG00000141933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141933 [Gene_View]  chr19:507497-519654 [Contig_View]  TPGS1 [Vega]
ICGC DataPortalENSG00000141933
TCGA cBioPortalTPGS1
AceView (NCBI)TPGS1
Genatlas (Paris)TPGS1
WikiGenes91978
SOURCE (Princeton)TPGS1
Genetics Home Reference (NIH)TPGS1
Genomic and cartography
GoldenPath hg38 (UCSC)TPGS1  -     chr19:507497-519654 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPGS1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblTPGS1 - 19p13.3 [CytoView hg19]  TPGS1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBITPGS1 [Mapview hg19]  TPGS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125401 AK126170 BC009520 BC148687 BC152801
RefSeq transcript (Entrez)NM_033513
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPGS1
Cluster EST : UnigeneHs.369613 [ NCBI ]
CGAP (NCI)Hs.369613
Alternative Splicing GalleryENSG00000141933
Gene ExpressionTPGS1 [ NCBI-GEO ]   TPGS1 [ EBI - ARRAY_EXPRESS ]   TPGS1 [ SEEK ]   TPGS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPGS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91978
GTEX Portal (Tissue expression)TPGS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTW0
Splice isoforms : SwissVarQ6ZTW0
PhosPhoSitePlusQ6ZTW0
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPGS1
DMDM Disease mutations91978
Blocks (Seattle)TPGS1
SuperfamilyQ6ZTW0
Human Protein AtlasENSG00000141933
Peptide AtlasQ6ZTW0
HPRD12701
IPIIPI00062511   IPI00783808   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTW0
IntAct (EBI)Q6ZTW0
FunCoupENSG00000141933
BioGRIDTPGS1
STRING (EMBL)TPGS1
ZODIACTPGS1
Ontologies - Pathways
QuickGOQ6ZTW0
Ontology : AmiGOcytoplasm  centrosome  microtubule  chemical synaptic transmission  multicellular organism development  sperm axoneme assembly  microtubule binding  protein polyglutamylation  axon  dendrite  adult behavior  motile cilium  vesicle localization  tubulin-glutamic acid ligase activity  
Ontology : EGO-EBIcytoplasm  centrosome  microtubule  chemical synaptic transmission  multicellular organism development  sperm axoneme assembly  microtubule binding  protein polyglutamylation  axon  dendrite  adult behavior  motile cilium  vesicle localization  tubulin-glutamic acid ligase activity  
NDEx NetworkTPGS1
Atlas of Cancer Signalling NetworkTPGS1
Wikipedia pathwaysTPGS1
Orthology - Evolution
OrthoDB91978
GeneTree (enSembl)ENSG00000141933
Phylogenetic Trees/Animal Genes : TreeFamTPGS1
HOVERGENQ6ZTW0
HOGENOMQ6ZTW0
Homologs : HomoloGeneTPGS1
Homology/Alignments : Family Browser (UCSC)TPGS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPGS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPGS1
dbVarTPGS1
ClinVarTPGS1
1000_GenomesTPGS1 
Exome Variant ServerTPGS1
ExAC (Exome Aggregation Consortium)TPGS1 (select the gene name)
Genetic variants : HAPMAP91978
Genomic Variants (DGV)TPGS1 [DGVbeta]
DECIPHERTPGS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPGS1 
Mutations
ICGC Data PortalTPGS1 
TCGA Data PortalTPGS1 
Broad Tumor PortalTPGS1
OASIS PortalTPGS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTPGS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPGS1
DgiDB (Drug Gene Interaction Database)TPGS1
DoCM (Curated mutations)TPGS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPGS1 (select a term)
intoGenTPGS1
Cancer3DTPGS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTPGS1
Genetic Testing Registry TPGS1
NextProtQ6ZTW0 [Medical]
TSGene91978
GENETestsTPGS1
Target ValidationTPGS1
Huge Navigator TPGS1 [HugePedia]
snp3D : Map Gene to Disease91978
BioCentury BCIQTPGS1
ClinGenTPGS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91978
Chemical/Pharm GKB GenePA134901246
Clinical trialTPGS1
Miscellaneous
canSAR (ICR)TPGS1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPGS1
EVEXTPGS1
GoPubMedTPGS1
iHOPTPGS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:19 CEST 2017

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