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TPGS2 (tubulin polyglutamylase complex subunit 2)

Identity

Alias_namesC18orf10
chromosome 18 open reading frame 10
Alias_symbol (synonym)DKFZP586M1523
HsT3006
Other aliasHMFN0601
L17
PGs2
HGNC (Hugo) TPGS2
LocusID (NCBI) 25941
Atlas_Id 54718
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 36794106 and ends at 36829216 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP5 (14q12) / TPGS2 (18q12.2)PDCD1LG2 (9p24.1) / TPGS2 (18q12.2)TPGS2 (18q12.2) / MCM4 (8q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0918p24q12ID108360 TT_t1418q12q12ID101875


External links

Nomenclature
HGNC (Hugo)TPGS2   24561
Cards
Entrez_Gene (NCBI)TPGS2  25941  tubulin polyglutamylase complex subunit 2
AliasesC18orf10; HMFN0601; L17; PGs2
GeneCards (Weizmann)TPGS2
Ensembl hg19 (Hinxton)ENSG00000134779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134779 [Gene_View]  ENSG00000134779 [Sequence]  chr18:36794106-36829216 [Contig_View]  TPGS2 [Vega]
ICGC DataPortalENSG00000134779
TCGA cBioPortalTPGS2
AceView (NCBI)TPGS2
Genatlas (Paris)TPGS2
WikiGenes25941
SOURCE (Princeton)TPGS2
Genetics Home Reference (NIH)TPGS2
Genomic and cartography
GoldenPath hg38 (UCSC)TPGS2  -     chr18:36794106-36829216 -  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPGS2  -     18q12.2   [Description]    (hg19-Feb_2009)
GoldenPathTPGS2 - 18q12.2 [CytoView hg19]  TPGS2 - 18q12.2 [CytoView hg38]
ImmunoBaseENSG00000134779
Mapping of homologs : NCBITPGS2 [Mapview hg19]  TPGS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA677381 AB073382 AK000543 AK295817 AL050225
RefSeq transcript (Entrez)NM_001271949 NM_001271950 NM_001271951 NM_001271952 NM_001271953 NM_001271954 NM_001271955 NM_001271956 NM_001330572 NM_015476
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPGS2
Alternative Splicing GalleryENSG00000134779
Gene ExpressionTPGS2 [ NCBI-GEO ]   TPGS2 [ EBI - ARRAY_EXPRESS ]   TPGS2 [ SEEK ]   TPGS2 [ MEM ]
Gene Expression Viewer (FireBrowse)TPGS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)25941
GTEX Portal (Tissue expression)TPGS2
Human Protein AtlasENSG00000134779-TPGS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPGS2
DMDM Disease mutations25941
Blocks (Seattle)TPGS2
Human Protein Atlas [tissue]ENSG00000134779-TPGS2 [tissue]
HPRD12684
IPIIPI00414449   IPI00607682   IPI00470794   
Protein Interaction databases
FunCoupENSG00000134779
BioGRIDTPGS2
STRING (EMBL)TPGS2
ZODIACTPGS2
Ontologies - Pathways
Huge Navigator TPGS2 [HugePedia]
snp3D : Map Gene to Disease25941
BioCentury BCIQTPGS2
ClinGenTPGS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25941
Chemical/Pharm GKB GenePA128394637
Clinical trialTPGS2
Miscellaneous
canSAR (ICR)TPGS2 (select the gene name)
DataMed IndexTPGS2
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPGS2
EVEXTPGS2
GoPubMedTPGS2
iHOPTPGS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:13:57 CET 2020

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