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TPM1 (tropomyosin 1)

Identity

Alias (NCBI)C15orf13
CMD1Y
CMH3
HEL-S-265
HTM-alpha
LVNC9
TMSA
HGNC (Hugo) TPM1
HGNC Previous nameC15orf13
 CMH3
HGNC Previous namechromosome 15 open reading frame 13
 cardiomyopathy, hypertrophic 3
 tropomyosin 1 (alpha)
LocusID (NCBI) 7168
Atlas_Id 42679
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 63048489 and ends at 63066178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MALAT1 (11q13.1) / TPM1 (15q22.2)MIR6723 (1p36.33) / TPM1 (15q22.2)TNC (9q33.1) / TPM1 (15q22.2)
TPM1 (15q22.2) / ALK (2p23.2)TPM1 (15q22.2) / GK (Xp21.2)TPM1 (15q22.2) / HOPX (4q12)
TPM1 (15q22.2) / NMNAT1 (1p36.22)TPM1 (15q22.2) / PTMS (12p13.31)TPM1 (15q22.2) / TPM1 (15q22.2)
TPM1 (15q22.2) / TPM2 (9p13.3)TPM1 15q22.2 / ALK 2p23.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TPM1   12010
LRG (Locus Reference Genomic)LRG_387
Cards
Entrez_Gene (NCBI)TPM1    tropomyosin 1
AliasesC15orf13; CMD1Y; CMH3; HEL-S-265; 
HTM-alpha; LVNC9; TMSA
GeneCards (Weizmann)TPM1
Ensembl hg19 (Hinxton)ENSG00000140416 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140416 [Gene_View]  ENSG00000140416 [Sequence]  chr15:63048489-63066178 [Contig_View]  TPM1 [Vega]
ICGC DataPortalENSG00000140416
TCGA cBioPortalTPM1
AceView (NCBI)TPM1
Genatlas (Paris)TPM1
SOURCE (Princeton)TPM1
Genetics Home Reference (NIH)TPM1
Genomic and cartography
GoldenPath hg38 (UCSC)TPM1  -     chr15:63048489-63066178 +  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPM1  -     15q22.2   [Description]    (hg19-Feb_2009)
GoldenPathTPM1 - 15q22.2 [CytoView hg19]  TPM1 - 15q22.2 [CytoView hg38]
ImmunoBaseENSG00000140416
Genome Data Viewer NCBITPM1 [Mapview hg19]  
OMIM115196   191010   611878   
Gene and transcription
Genbank (Entrez)AB209041 AF474156 AJ000147 AJ001055 AK055197
RefSeq transcript (Entrez)NM_000366 NM_001018004 NM_001018005 NM_001018006 NM_001018007 NM_001018008 NM_001018020 NM_001301244 NM_001301289 NM_001330344 NM_001330346 NM_001330351 NM_001365776 NM_001365777 NM_001365778 NM_001365779 NM_001365780 NM_001365781 NM_001365782
Consensus coding sequences : CCDS (NCBI)TPM1
Gene ExpressionTPM1 [ NCBI-GEO ]   TPM1 [ EBI - ARRAY_EXPRESS ]   TPM1 [ SEEK ]   TPM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPM1 [ Firebrowse - Broad ]
GenevisibleExpression of TPM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7168
GTEX Portal (Tissue expression)TPM1
Human Protein AtlasENSG00000140416-TPM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPM1
Human Protein Atlas [tissue]ENSG00000140416-TPM1 [tissue]
HPRD01839
Protein Interaction databases
BioGRIDTPM1
STRING (EMBL)TPM1
ZODIACTPM1
Ontologies - Pathways
Litterature
PubMed242 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:01 CEST 2021

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