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TPPP3 (tubulin polymerization promoting protein family member 3)

Identity

Alias_symbol (synonym)CGI-38
p25gamma
p20
Other aliasTPPP/p20
HGNC (Hugo) TPPP3
LocusID (NCBI) 51673
Atlas_Id 51390
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67389807 and ends at 67393535 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AUTS2 (7q11.22) / TPPP3 (16q22.1)TPPP3 (16q22.1) / ANKRD30A (10p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPPP3   24162
Cards
Entrez_Gene (NCBI)TPPP3  51673  tubulin polymerization promoting protein family member 3
AliasesCGI-38; TPPP/p20; p20; p25gamma
GeneCards (Weizmann)TPPP3
Ensembl hg19 (Hinxton)ENSG00000159713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159713 [Gene_View]  chr16:67389807-67393535 [Contig_View]  TPPP3 [Vega]
ICGC DataPortalENSG00000159713
TCGA cBioPortalTPPP3
AceView (NCBI)TPPP3
Genatlas (Paris)TPPP3
WikiGenes51673
SOURCE (Princeton)TPPP3
Genetics Home Reference (NIH)TPPP3
Genomic and cartography
GoldenPath hg38 (UCSC)TPPP3  -     chr16:67389807-67393535 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPPP3  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblTPPP3 - 16q22.1 [CytoView hg19]  TPPP3 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBITPPP3 [Mapview hg19]  TPPP3 [Mapview hg38]
OMIM616957   
Gene and transcription
Genbank (Entrez)AF078846 AF132972 AW044067 BC000691 BC037798
RefSeq transcript (Entrez)NM_015964 NM_016140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPPP3
Cluster EST : UnigeneHs.534458 [ NCBI ]
CGAP (NCI)Hs.534458
Alternative Splicing GalleryENSG00000159713
Gene ExpressionTPPP3 [ NCBI-GEO ]   TPPP3 [ EBI - ARRAY_EXPRESS ]   TPPP3 [ SEEK ]   TPPP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TPPP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GånerestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51673
GTEX Portal (Tissue expression)TPPP3
Human Protein AtlasENSG00000159713-TPPP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW30
Splice isoforms : SwissVarQ9BW30
PhosPhoSitePlusQ9BW30
Domains : Interpro (EBI)EF-hand-dom_pair    P25-alpha    TPPP3   
Domain families : Pfam (Sanger)p25-alpha (PF05517)   
Domain families : Pfam (NCBI)pfam05517   
Conserved Domain (NCBI)TPPP3
DMDM Disease mutations51673
Blocks (Seattle)TPPP3
PDB (SRS)2JRF   
PDB (PDBSum)2JRF   
PDB (IMB)2JRF   
PDB (RSDB)2JRF   
Structural Biology KnowledgeBase2JRF   
SCOP (Structural Classification of Proteins)2JRF   
CATH (Classification of proteins structures)2JRF   
SuperfamilyQ9BW30
Human Protein Atlas [tissue]ENSG00000159713-TPPP3 [tissue]
Peptide AtlasQ9BW30
HPRD16710
IPIIPI00306413   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW30
IntAct (EBI)Q9BW30
FunCoupENSG00000159713
BioGRIDTPPP3
STRING (EMBL)TPPP3
ZODIACTPPP3
Ontologies - Pathways
QuickGOQ9BW30
Ontology : AmiGOmicrotubule bundle formation  cytoplasm  microtubule  tubulin binding  microtubule polymerization  extracellular exosome  
Ontology : EGO-EBImicrotubule bundle formation  cytoplasm  microtubule  tubulin binding  microtubule polymerization  extracellular exosome  
NDEx NetworkTPPP3
Atlas of Cancer Signalling NetworkTPPP3
Wikipedia pathwaysTPPP3
Orthology - Evolution
OrthoDB51673
GeneTree (enSembl)ENSG00000159713
Phylogenetic Trees/Animal Genes : TreeFamTPPP3
HOVERGENQ9BW30
HOGENOMQ9BW30
Homologs : HomoloGeneTPPP3
Homology/Alignments : Family Browser (UCSC)TPPP3
Gene fusions - Rearrangements
Fusion: Tumor Portal TPPP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPPP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPPP3
dbVarTPPP3
ClinVarTPPP3
1000_GenomesTPPP3 
Exome Variant ServerTPPP3
ExAC (Exome Aggregation Consortium)ENSG00000159713
GNOMAD BrowserENSG00000159713
Genetic variants : HAPMAP51673
Genomic Variants (DGV)TPPP3 [DGVbeta]
DECIPHERTPPP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPPP3 
Mutations
ICGC Data PortalTPPP3 
TCGA Data PortalTPPP3 
Broad Tumor PortalTPPP3
OASIS PortalTPPP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPPP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPPP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPPP3
DgiDB (Drug Gene Interaction Database)TPPP3
DoCM (Curated mutations)TPPP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPPP3 (select a term)
intoGenTPPP3
Cancer3DTPPP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616957   
Orphanet
MedgenTPPP3
Genetic Testing Registry TPPP3
NextProtQ9BW30 [Medical]
TSGene51673
GENETestsTPPP3
Target ValidationTPPP3
Huge Navigator TPPP3 [HugePedia]
snp3D : Map Gene to Disease51673
BioCentury BCIQTPPP3
ClinGenTPPP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51673
Chemical/Pharm GKB GenePA162406823
Clinical trialTPPP3
Miscellaneous
canSAR (ICR)TPPP3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPPP3
EVEXTPPP3
GoPubMedTPPP3
iHOPTPPP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:15:25 CET 2017

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