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TPRG1 (tumor protein p63 regulated 1)

Identity

Alias (NCBI)FAM79B
HGNC (Hugo) TPRG1
HGNC Alias symbFLJ41238
FLJ43694
HGNC Previous nameFAM79B
HGNC Previous namefamily with sequence similarity 79, member B
LocusID (NCBI) 285386
Atlas_Id 49993
Location 3q28  [Link to chromosome band 3q28]
Location_base_pair Starts at 189171971 and ends at 189325304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADCY2 (5p15.31) / TPRG1 (3q28)C3orf70 (3q27.2) / TPRG1 (3q28)FGFR3 (4p16.3) / TPRG1 (3q28)
IL1RAP (3q28) / TPRG1 (3q28)LMBR1 (7q36.3) / TPRG1 (3q28)SOX2 (3q26.33) / TPRG1 (3q28)
TPRG1 (3q28) / DGKG (3q27.2)TPRG1 (3q28) / SOX2 (3q26.33)XXYLT1 (3q29) / TPRG1 (3q28)
C3orf21 TPRG1 3q28C3orf70 3q27.2 / TPRG1 3q28FGFR3 4p16.3 / TPRG1 3q28
IL1RAP 3q28 / TPRG1 3q28LMBR1 7q36.3 / TPRG1 3q28TPRG1 3q28 / DGKG 3q27.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TPRG1   24759
Cards
Entrez_Gene (NCBI)TPRG1    tumor protein p63 regulated 1
AliasesFAM79B
GeneCards (Weizmann)TPRG1
Ensembl hg19 (Hinxton)ENSG00000188001 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188001 [Gene_View]  ENSG00000188001 [Sequence]  chr3:189171971-189325304 [Contig_View]  TPRG1 [Vega]
ICGC DataPortalENSG00000188001
TCGA cBioPortalTPRG1
AceView (NCBI)TPRG1
Genatlas (Paris)TPRG1
SOURCE (Princeton)TPRG1
Genetics Home Reference (NIH)TPRG1
Genomic and cartography
GoldenPath hg38 (UCSC)TPRG1  -     chr3:189171971-189325304 +  3q28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPRG1  -     3q28   [Description]    (hg19-Feb_2009)
GoldenPathTPRG1 - 3q28 [CytoView hg19]  TPRG1 - 3q28 [CytoView hg38]
ImmunoBaseENSG00000188001
Genome Data Viewer NCBITPRG1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK123232 AK125682 BC101550 BC101552 CR737485
RefSeq transcript (Entrez)NM_198485
Consensus coding sequences : CCDS (NCBI)TPRG1
Gene ExpressionTPRG1 [ NCBI-GEO ]   TPRG1 [ EBI - ARRAY_EXPRESS ]   TPRG1 [ SEEK ]   TPRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPRG1 [ Firebrowse - Broad ]
GenevisibleExpression of TPRG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285386
GTEX Portal (Tissue expression)TPRG1
Human Protein AtlasENSG00000188001-TPRG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUI0
PhosPhoSitePlusQ6ZUI0
Domaine pattern : Prosite (Expaxy)HSAC2 (PS51791)   
Domains : Interpro (EBI)hSac2    Inositol_phosphatase    TPRG1-like   
Domain families : Pfam (Sanger)hSac2 (PF12456)   
Domain families : Pfam (NCBI)pfam12456   
Conserved Domain (NCBI)TPRG1
SuperfamilyQ6ZUI0
AlphaFold pdb e-kbQ6ZUI0   
Human Protein Atlas [tissue]ENSG00000188001-TPRG1 [tissue]
HPRD13451
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUI0
IntAct (EBI)Q6ZUI0
BioGRIDTPRG1
STRING (EMBL)TPRG1
ZODIACTPRG1
Ontologies - Pathways
QuickGOQ6ZUI0
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkTPRG1
Atlas of Cancer Signalling NetworkTPRG1
Wikipedia pathwaysTPRG1
Orthology - Evolution
OrthoDB285386
GeneTree (enSembl)ENSG00000188001
Phylogenetic Trees/Animal Genes : TreeFamTPRG1
Homologs : HomoloGeneTPRG1
Homology/Alignments : Family Browser (UCSC)TPRG1
Gene fusions - Rearrangements
Fusion : MitelmanC3orf70/TPRG1 [3q27.2/3q28]  
Fusion : MitelmanFGFR3/TPRG1 [4p16.3/3q28]  
Fusion : MitelmanLMBR1/TPRG1 [7q36.3/3q28]  
Fusion : MitelmanSOX2/TPRG1 [3q26.33/3q28]  
Fusion : MitelmanTPRG1/DGKG [3q28/3q27.2]  
Fusion : MitelmanTPRG1/SOX2 [3q28/3q26.33]  
Fusion : QuiverTPRG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRG1
dbVarTPRG1
ClinVarTPRG1
MonarchTPRG1
1000_GenomesTPRG1 
Exome Variant ServerTPRG1
GNOMAD BrowserENSG00000188001
Varsome BrowserTPRG1
ACMGTPRG1 variants
VarityQ6ZUI0
Genomic Variants (DGV)TPRG1 [DGVbeta]
DECIPHERTPRG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPRG1 
Mutations
ICGC Data PortalTPRG1 
TCGA Data PortalTPRG1 
Broad Tumor PortalTPRG1
OASIS PortalTPRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTPRG1
Mutations and Diseases : HGMDTPRG1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTPRG1
DgiDB (Drug Gene Interaction Database)TPRG1
DoCM (Curated mutations)TPRG1
CIViC (Clinical Interpretations of Variants in Cancer)TPRG1
Cancer3DTPRG1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTPRG1
MedgenTPRG1
Genetic Testing Registry TPRG1
NextProtQ6ZUI0 [Medical]
GENETestsTPRG1
Target ValidationTPRG1
Huge Navigator TPRG1 [HugePedia]
ClinGenTPRG1
Clinical trials, drugs, therapy
MyCancerGenomeTPRG1
Protein Interactions : CTDTPRG1
Pharm GKB GenePA162406838
PharosQ6ZUI0
Clinical trialTPRG1
Miscellaneous
canSAR (ICR)TPRG1
HarmonizomeTPRG1
DataMed IndexTPRG1
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:02 CEST 2021

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