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TPRG1L (tumor protein p63 regulated 1 like)

Identity

Alias (NCBI)FAM79A
h-mover
mover
HGNC (Hugo) TPRG1L
HGNC Alias symbRP11-46F15.3
FLJ21811
HGNC Previous nameFAM79A
HGNC Previous namefamily with sequence similarity 79, member A
LocusID (NCBI) 127262
Atlas_Id 50000
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3625015 and ends at 3630127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADNP (20q13.13) / TPRG1L (1p36.32)TMEM30A (6q14.1) / TPRG1L (1p36.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TPRG1L   27007
Cards
Entrez_Gene (NCBI)TPRG1L    tumor protein p63 regulated 1 like
AliasesFAM79A; h-mover; mover
GeneCards (Weizmann)TPRG1L
Ensembl hg19 (Hinxton)ENSG00000158109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158109 [Gene_View]  ENSG00000158109 [Sequence]  chr1:3625015-3630127 [Contig_View]  TPRG1L [Vega]
ICGC DataPortalENSG00000158109
TCGA cBioPortalTPRG1L
AceView (NCBI)TPRG1L
Genatlas (Paris)TPRG1L
SOURCE (Princeton)TPRG1L
Genetics Home Reference (NIH)TPRG1L
Genomic and cartography
GoldenPath hg38 (UCSC)TPRG1L  -     chr1:3625015-3630127 +  1p36.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPRG1L  -     1p36.32   [Description]    (hg19-Feb_2009)
GoldenPathTPRG1L - 1p36.32 [CytoView hg19]  TPRG1L - 1p36.32 [CytoView hg38]
ImmunoBaseENSG00000158109
Genome Data Viewer NCBITPRG1L [Mapview hg19]  
OMIM611460   
Gene and transcription
Genbank (Entrez)AK025409 AK025464 AK096427 AK289919 AK298343
RefSeq transcript (Entrez)NM_182752
Consensus coding sequences : CCDS (NCBI)TPRG1L
Gene ExpressionTPRG1L [ NCBI-GEO ]   TPRG1L [ EBI - ARRAY_EXPRESS ]   TPRG1L [ SEEK ]   TPRG1L [ MEM ]
Gene Expression Viewer (FireBrowse)TPRG1L [ Firebrowse - Broad ]
GenevisibleExpression of TPRG1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127262
GTEX Portal (Tissue expression)TPRG1L
Human Protein AtlasENSG00000158109-TPRG1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0D9
PhosPhoSitePlusQ5T0D9
Domaine pattern : Prosite (Expaxy)HSAC2 (PS51791)   
Domains : Interpro (EBI)hSac2    Inositol_phosphatase    TPRG1-like   
Domain families : Pfam (Sanger)hSac2 (PF12456)   
Domain families : Pfam (NCBI)pfam12456   
Conserved Domain (NCBI)TPRG1L
SuperfamilyQ5T0D9
AlphaFold pdb e-kbQ5T0D9   
Human Protein Atlas [tissue]ENSG00000158109-TPRG1L [tissue]
HPRD14037
Protein Interaction databases
DIP (DOE-UCLA)Q5T0D9
IntAct (EBI)Q5T0D9
BioGRIDTPRG1L
STRING (EMBL)TPRG1L
ZODIACTPRG1L
Ontologies - Pathways
QuickGOQ5T0D9
Ontology : AmiGOmolecular_function  cytoplasm  synaptic vesicle  synaptic vesicle  biological_process  synaptic vesicle membrane  calyx of Held  presynaptic active zone  regulation of synaptic transmission, glutamatergic  extracellular exosome  
Ontology : EGO-EBImolecular_function  cytoplasm  synaptic vesicle  synaptic vesicle  biological_process  synaptic vesicle membrane  calyx of Held  presynaptic active zone  regulation of synaptic transmission, glutamatergic  extracellular exosome  
NDEx NetworkTPRG1L
Atlas of Cancer Signalling NetworkTPRG1L
Wikipedia pathwaysTPRG1L
Orthology - Evolution
OrthoDB127262
GeneTree (enSembl)ENSG00000158109
Phylogenetic Trees/Animal Genes : TreeFamTPRG1L
Homologs : HomoloGeneTPRG1L
Homology/Alignments : Family Browser (UCSC)TPRG1L
Gene fusions - Rearrangements
Fusion : QuiverTPRG1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRG1L
dbVarTPRG1L
ClinVarTPRG1L
MonarchTPRG1L
1000_GenomesTPRG1L 
Exome Variant ServerTPRG1L
GNOMAD BrowserENSG00000158109
Varsome BrowserTPRG1L
ACMGTPRG1L variants
VarityQ5T0D9
Genomic Variants (DGV)TPRG1L [DGVbeta]
DECIPHERTPRG1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPRG1L 
Mutations
ICGC Data PortalTPRG1L 
TCGA Data PortalTPRG1L 
Broad Tumor PortalTPRG1L
OASIS PortalTPRG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTPRG1L
Mutations and Diseases : HGMDTPRG1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTPRG1L
DgiDB (Drug Gene Interaction Database)TPRG1L
DoCM (Curated mutations)TPRG1L
CIViC (Clinical Interpretations of Variants in Cancer)TPRG1L
Cancer3DTPRG1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611460   
Orphanet
DisGeNETTPRG1L
MedgenTPRG1L
Genetic Testing Registry TPRG1L
NextProtQ5T0D9 [Medical]
GENETestsTPRG1L
Target ValidationTPRG1L
Huge Navigator TPRG1L [HugePedia]
ClinGenTPRG1L
Clinical trials, drugs, therapy
MyCancerGenomeTPRG1L
Protein Interactions : CTDTPRG1L
Pharm GKB GenePA162406855
PharosQ5T0D9
Clinical trialTPRG1L
Miscellaneous
canSAR (ICR)TPRG1L
HarmonizomeTPRG1L
DataMed IndexTPRG1L
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPRG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:03 CEST 2021

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