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TPRG1L (tumor protein p63 regulated 1-like)

Identity

Alias_namesFAM79A
family with sequence similarity 79
Alias_symbol (synonym)RP11-46F15.3
FLJ21811
Other aliash-mover
mover
HGNC (Hugo) TPRG1L
LocusID (NCBI) 127262
Atlas_Id 50000
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 3541556 and ends at 3546694 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADNP (20q13.13) / TPRG1L (1p36.32)TMEM30A (6q14.1) / TPRG1L (1p36.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPRG1L   27007
Cards
Entrez_Gene (NCBI)TPRG1L  127262  tumor protein p63 regulated 1-like
AliasesFAM79A; h-mover; mover
GeneCards (Weizmann)TPRG1L
Ensembl hg19 (Hinxton)ENSG00000158109 [Gene_View]  chr1:3541556-3546694 [Contig_View]  TPRG1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000158109 [Gene_View]  chr1:3541556-3546694 [Contig_View]  TPRG1L [Vega]
ICGC DataPortalENSG00000158109
TCGA cBioPortalTPRG1L
AceView (NCBI)TPRG1L
Genatlas (Paris)TPRG1L
WikiGenes127262
SOURCE (Princeton)TPRG1L
Genetics Home Reference (NIH)TPRG1L
Genomic and cartography
GoldenPath hg19 (UCSC)TPRG1L  -     chr1:3541556-3546694 +  1p36.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TPRG1L  -     1p36.32   [Description]    (hg38-Dec_2013)
EnsemblTPRG1L - 1p36.32 [CytoView hg19]  TPRG1L - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBITPRG1L [Mapview hg19]  TPRG1L [Mapview hg38]
OMIM611460   
Gene and transcription
Genbank (Entrez)AK025409 AK025464 AK096427 AK289919 AK298343
RefSeq transcript (Entrez)NM_182752
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)TPRG1L
Cluster EST : UnigeneHs.20529 [ NCBI ]
CGAP (NCI)Hs.20529
Alternative Splicing GalleryENSG00000158109
Gene ExpressionTPRG1L [ NCBI-GEO ]   TPRG1L [ EBI - ARRAY_EXPRESS ]   TPRG1L [ SEEK ]   TPRG1L [ MEM ]
Gene Expression Viewer (FireBrowse)TPRG1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127262
GTEX Portal (Tissue expression)TPRG1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0D9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0D9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0D9
Splice isoforms : SwissVarQ5T0D9
PhosPhoSitePlusQ5T0D9
Domains : Interpro (EBI)Inositol_phosphatase   
Domain families : Pfam (Sanger)hSac2 (PF12456)   
Domain families : Pfam (NCBI)pfam12456   
Conserved Domain (NCBI)TPRG1L
DMDM Disease mutations127262
Blocks (Seattle)TPRG1L
SuperfamilyQ5T0D9
Human Protein AtlasENSG00000158109
Peptide AtlasQ5T0D9
HPRD14037
IPIIPI00413578   IPI00102976   IPI00908763   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0D9
IntAct (EBI)Q5T0D9
FunCoupENSG00000158109
BioGRIDTPRG1L
STRING (EMBL)TPRG1L
ZODIACTPRG1L
Ontologies - Pathways
QuickGOQ5T0D9
Ontology : AmiGOmolecular_function  synaptic vesicle  biological_process  cell junction  identical protein binding  extracellular exosome  
Ontology : EGO-EBImolecular_function  synaptic vesicle  biological_process  cell junction  identical protein binding  extracellular exosome  
NDEx NetworkTPRG1L
Atlas of Cancer Signalling NetworkTPRG1L
Wikipedia pathwaysTPRG1L
Orthology - Evolution
OrthoDB127262
GeneTree (enSembl)ENSG00000158109
Phylogenetic Trees/Animal Genes : TreeFamTPRG1L
HOVERGENQ5T0D9
HOGENOMQ5T0D9
Homologs : HomoloGeneTPRG1L
Homology/Alignments : Family Browser (UCSC)TPRG1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRG1L
dbVarTPRG1L
ClinVarTPRG1L
1000_GenomesTPRG1L 
Exome Variant ServerTPRG1L
ExAC (Exome Aggregation Consortium)TPRG1L (select the gene name)
Genetic variants : HAPMAP127262
Genomic Variants (DGV)TPRG1L [DGVbeta]
DECIPHER (Syndromes)1:3541556-3546694  ENSG00000158109
CONAN: Copy Number AnalysisTPRG1L 
Mutations
ICGC Data PortalTPRG1L 
TCGA Data PortalTPRG1L 
Broad Tumor PortalTPRG1L
OASIS PortalTPRG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPRG1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPRG1L
DgiDB (Drug Gene Interaction Database)TPRG1L
DoCM (Curated mutations)TPRG1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPRG1L (select a term)
intoGenTPRG1L
Cancer3DTPRG1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611460   
Orphanet
MedgenTPRG1L
Genetic Testing Registry TPRG1L
NextProtQ5T0D9 [Medical]
TSGene127262
GENETestsTPRG1L
Huge Navigator TPRG1L [HugePedia]
snp3D : Map Gene to Disease127262
BioCentury BCIQTPRG1L
ClinGenTPRG1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127262
Chemical/Pharm GKB GenePA162406855
Clinical trialTPRG1L
Miscellaneous
canSAR (ICR)TPRG1L (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPRG1L
EVEXTPRG1L
GoPubMedTPRG1L
iHOPTPRG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:13 CEST 2017

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