Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TPRKB (TP53RK binding protein)

Identity

Alias_symbol (synonym)CGI-121
CGI121
Other alias
HGNC (Hugo) TPRKB
LocusID (NCBI) 51002
Atlas_Id 75082
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 73729837 and ends at 73737406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC284889 () / TPRKB (2p13.1)UBAP1 (9p13.3) / TPRKB (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPRKB   24259
Cards
Entrez_Gene (NCBI)TPRKB  51002  TP53RK binding protein
AliasesCGI-121; CGI121
GeneCards (Weizmann)TPRKB
Ensembl hg19 (Hinxton)ENSG00000144034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144034 [Gene_View]  chr2:73729837-73737406 [Contig_View]  TPRKB [Vega]
ICGC DataPortalENSG00000144034
TCGA cBioPortalTPRKB
AceView (NCBI)TPRKB
Genatlas (Paris)TPRKB
WikiGenes51002
SOURCE (Princeton)TPRKB
Genetics Home Reference (NIH)TPRKB
Genomic and cartography
GoldenPath hg38 (UCSC)TPRKB  -     chr2:73729837-73737406 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPRKB  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblTPRKB - 2p13.1 [CytoView hg19]  TPRKB - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBITPRKB [Mapview hg19]  TPRKB [Mapview hg38]
OMIM608680   
Gene and transcription
Genbank (Entrez)AF060921 AF151879 AI759966 AK097254 AK291071
RefSeq transcript (Entrez)NM_001330386 NM_001330387 NM_001330388 NM_001330389 NM_001330390 NM_001330391 NM_001330392 NM_016058
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPRKB
Cluster EST : UnigeneHs.157401 [ NCBI ]
CGAP (NCI)Hs.157401
Alternative Splicing GalleryENSG00000144034
Gene ExpressionTPRKB [ NCBI-GEO ]   TPRKB [ EBI - ARRAY_EXPRESS ]   TPRKB [ SEEK ]   TPRKB [ MEM ]
Gene Expression Viewer (FireBrowse)TPRKB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51002
GTEX Portal (Tissue expression)TPRKB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3C4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3C4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3C4
Splice isoforms : SwissVarQ9Y3C4
PhosPhoSitePlusQ9Y3C4
Domains : Interpro (EBI)CGI121/TPRKB   
Domain families : Pfam (Sanger)CGI-121 (PF08617)   
Domain families : Pfam (NCBI)pfam08617   
Conserved Domain (NCBI)TPRKB
DMDM Disease mutations51002
Blocks (Seattle)TPRKB
PDB (SRS)3ENP   
PDB (PDBSum)3ENP   
PDB (IMB)3ENP   
PDB (RSDB)3ENP   
Structural Biology KnowledgeBase3ENP   
SCOP (Structural Classification of Proteins)3ENP   
CATH (Classification of proteins structures)3ENP   
SuperfamilyQ9Y3C4
Human Protein AtlasENSG00000144034
Peptide AtlasQ9Y3C4
IPIIPI00301432   IPI00829935   IPI00217362   IPI00883884   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3C4
IntAct (EBI)Q9Y3C4
FunCoupENSG00000144034
BioGRIDTPRKB
STRING (EMBL)TPRKB
ZODIACTPRKB
Ontologies - Pathways
QuickGOQ9Y3C4
Ontology : AmiGOEKC/KEOPS complex  protein binding  nucleus  cytosol  tRNA processing  protein kinase binding  
Ontology : EGO-EBIEKC/KEOPS complex  protein binding  nucleus  cytosol  tRNA processing  protein kinase binding  
NDEx NetworkTPRKB
Atlas of Cancer Signalling NetworkTPRKB
Wikipedia pathwaysTPRKB
Orthology - Evolution
OrthoDB51002
GeneTree (enSembl)ENSG00000144034
Phylogenetic Trees/Animal Genes : TreeFamTPRKB
HOVERGENQ9Y3C4
HOGENOMQ9Y3C4
Homologs : HomoloGeneTPRKB
Homology/Alignments : Family Browser (UCSC)TPRKB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRKB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRKB
dbVarTPRKB
ClinVarTPRKB
1000_GenomesTPRKB 
Exome Variant ServerTPRKB
ExAC (Exome Aggregation Consortium)TPRKB (select the gene name)
Genetic variants : HAPMAP51002
Genomic Variants (DGV)TPRKB [DGVbeta]
DECIPHERTPRKB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPRKB 
Mutations
ICGC Data PortalTPRKB 
TCGA Data PortalTPRKB 
Broad Tumor PortalTPRKB
OASIS PortalTPRKB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRKB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPRKB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPRKB
DgiDB (Drug Gene Interaction Database)TPRKB
DoCM (Curated mutations)TPRKB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPRKB (select a term)
intoGenTPRKB
Cancer3DTPRKB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608680   
Orphanet
MedgenTPRKB
Genetic Testing Registry TPRKB
NextProtQ9Y3C4 [Medical]
TSGene51002
GENETestsTPRKB
Target ValidationTPRKB
Huge Navigator TPRKB [HugePedia]
snp3D : Map Gene to Disease51002
BioCentury BCIQTPRKB
ClinGenTPRKB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51002
Chemical/Pharm GKB GenePA143485660
Clinical trialTPRKB
Miscellaneous
canSAR (ICR)TPRKB (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPRKB
EVEXTPRKB
GoPubMedTPRKB
iHOPTPRKB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.