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TPRX1 (tetra-peptide repeat homeobox 1)

Identity

Alias_symbol (synonym)FLJ40321
Other aliasTPRX
HGNC (Hugo) TPRX1
LocusID (NCBI) 284355
Atlas_Id 75084
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48304500 and ends at 48306861 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPRX1   32174
Cards
Entrez_Gene (NCBI)TPRX1  284355  tetra-peptide repeat homeobox 1
AliasesTPRX
GeneCards (Weizmann)TPRX1
Ensembl hg19 (Hinxton)ENSG00000178928 [Gene_View]  chr19:48304500-48306861 [Contig_View]  TPRX1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178928 [Gene_View]  chr19:48304500-48306861 [Contig_View]  TPRX1 [Vega]
ICGC DataPortalENSG00000178928
TCGA cBioPortalTPRX1
AceView (NCBI)TPRX1
Genatlas (Paris)TPRX1
WikiGenes284355
SOURCE (Princeton)TPRX1
Genetics Home Reference (NIH)TPRX1
Genomic and cartography
GoldenPath hg19 (UCSC)TPRX1  -     chr19:48304500-48306861 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TPRX1  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblTPRX1 - 19q13.33 [CytoView hg19]  TPRX1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBITPRX1 [Mapview hg19]  TPRX1 [Mapview hg38]
OMIM611166   
Gene and transcription
Genbank (Entrez)AK097640 BC137501 BC141863 BC144673 DQ340180
RefSeq transcript (Entrez)NM_198479
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)TPRX1
Cluster EST : UnigeneHs.629812 [ NCBI ]
CGAP (NCI)Hs.629812
Alternative Splicing GalleryENSG00000178928
Gene ExpressionTPRX1 [ NCBI-GEO ]   TPRX1 [ EBI - ARRAY_EXPRESS ]   TPRX1 [ SEEK ]   TPRX1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPRX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284355
GTEX Portal (Tissue expression)TPRX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7U7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7U7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7U7
Splice isoforms : SwissVarQ8N7U7
PhosPhoSitePlusQ8N7U7
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_dom    Homeodomain-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPRX1
DMDM Disease mutations284355
Blocks (Seattle)TPRX1
SuperfamilyQ8N7U7
Human Protein AtlasENSG00000178928
Peptide AtlasQ8N7U7
HPRD13447
IPIIPI01012734   IPI00856071   IPI01012959   IPI00394791   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7U7
IntAct (EBI)Q8N7U7
FunCoupENSG00000178928
BioGRIDTPRX1
STRING (EMBL)TPRX1
ZODIACTPRX1
Ontologies - Pathways
QuickGOQ8N7U7
Ontology : AmiGODNA binding  nucleus  
Ontology : EGO-EBIDNA binding  nucleus  
NDEx NetworkTPRX1
Atlas of Cancer Signalling NetworkTPRX1
Wikipedia pathwaysTPRX1
Orthology - Evolution
OrthoDB284355
GeneTree (enSembl)ENSG00000178928
Phylogenetic Trees/Animal Genes : TreeFamTPRX1
HOVERGENQ8N7U7
HOGENOMQ8N7U7
Homologs : HomoloGeneTPRX1
Homology/Alignments : Family Browser (UCSC)TPRX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRX1
dbVarTPRX1
ClinVarTPRX1
1000_GenomesTPRX1 
Exome Variant ServerTPRX1
ExAC (Exome Aggregation Consortium)TPRX1 (select the gene name)
Genetic variants : HAPMAP284355
Genomic Variants (DGV)TPRX1 [DGVbeta]
DECIPHER (Syndromes)19:48304500-48306861  ENSG00000178928
CONAN: Copy Number AnalysisTPRX1 
Mutations
ICGC Data PortalTPRX1 
TCGA Data PortalTPRX1 
Broad Tumor PortalTPRX1
OASIS PortalTPRX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPRX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPRX1
DgiDB (Drug Gene Interaction Database)TPRX1
DoCM (Curated mutations)TPRX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPRX1 (select a term)
intoGenTPRX1
Cancer3DTPRX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611166   
Orphanet
MedgenTPRX1
Genetic Testing Registry TPRX1
NextProtQ8N7U7 [Medical]
TSGene284355
GENETestsTPRX1
Huge Navigator TPRX1 [HugePedia]
snp3D : Map Gene to Disease284355
BioCentury BCIQTPRX1
ClinGenTPRX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284355
Chemical/Pharm GKB GenePA142670706
Clinical trialTPRX1
Miscellaneous
canSAR (ICR)TPRX1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPRX1
EVEXTPRX1
GoPubMedTPRX1
iHOPTPRX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:25 CET 2017

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