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TPRX1 (tetrapeptide repeat homeobox 1)

Identity

Alias (NCBI)TPRX
HGNC (Hugo) TPRX1
HGNC Alias symbFLJ40321
LocusID (NCBI) 284355
Atlas_Id 75084
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 47801243 and ends at 47803604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TPRX1   32174
Cards
Entrez_Gene (NCBI)TPRX1    tetrapeptide repeat homeobox 1
AliasesTPRX
GeneCards (Weizmann)TPRX1
Ensembl hg19 (Hinxton)ENSG00000178928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178928 [Gene_View]  ENSG00000178928 [Sequence]  chr19:47801243-47803604 [Contig_View]  TPRX1 [Vega]
ICGC DataPortalENSG00000178928
TCGA cBioPortalTPRX1
AceView (NCBI)TPRX1
Genatlas (Paris)TPRX1
SOURCE (Princeton)TPRX1
Genetics Home Reference (NIH)TPRX1
Genomic and cartography
GoldenPath hg38 (UCSC)TPRX1  -     chr19:47801243-47803604 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPRX1  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathTPRX1 - 19q13.33 [CytoView hg19]  TPRX1 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000178928
Genome Data Viewer NCBITPRX1 [Mapview hg19]  
OMIM611166   
Gene and transcription
Genbank (Entrez)AK097640 BC137501 BC141863 BC144673 DQ340180
RefSeq transcript (Entrez)NM_198479
Consensus coding sequences : CCDS (NCBI)TPRX1
Gene ExpressionTPRX1 [ NCBI-GEO ]   TPRX1 [ EBI - ARRAY_EXPRESS ]   TPRX1 [ SEEK ]   TPRX1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPRX1 [ Firebrowse - Broad ]
GenevisibleExpression of TPRX1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284355
GTEX Portal (Tissue expression)TPRX1
Human Protein AtlasENSG00000178928-TPRX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7U7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7U7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7U7
PhosPhoSitePlusQ8N7U7
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPRX1
SuperfamilyQ8N7U7
AlphaFold pdb e-kbQ8N7U7   
Human Protein Atlas [tissue]ENSG00000178928-TPRX1 [tissue]
HPRD13447
Protein Interaction databases
DIP (DOE-UCLA)Q8N7U7
IntAct (EBI)Q8N7U7
BioGRIDTPRX1
STRING (EMBL)TPRX1
ZODIACTPRX1
Ontologies - Pathways
QuickGOQ8N7U7
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  
NDEx NetworkTPRX1
Atlas of Cancer Signalling NetworkTPRX1
Wikipedia pathwaysTPRX1
Orthology - Evolution
OrthoDB284355
GeneTree (enSembl)ENSG00000178928
Phylogenetic Trees/Animal Genes : TreeFamTPRX1
Homologs : HomoloGeneTPRX1
Homology/Alignments : Family Browser (UCSC)TPRX1
Gene fusions - Rearrangements
Fusion : QuiverTPRX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRX1
dbVarTPRX1
ClinVarTPRX1
MonarchTPRX1
1000_GenomesTPRX1 
Exome Variant ServerTPRX1
GNOMAD BrowserENSG00000178928
Varsome BrowserTPRX1
ACMGTPRX1 variants
VarityQ8N7U7
Genomic Variants (DGV)TPRX1 [DGVbeta]
DECIPHERTPRX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPRX1 
Mutations
ICGC Data PortalTPRX1 
TCGA Data PortalTPRX1 
Broad Tumor PortalTPRX1
OASIS PortalTPRX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTPRX1
Mutations and Diseases : HGMDTPRX1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTPRX1
DgiDB (Drug Gene Interaction Database)TPRX1
DoCM (Curated mutations)TPRX1
CIViC (Clinical Interpretations of Variants in Cancer)TPRX1
Cancer3DTPRX1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611166   
Orphanet
DisGeNETTPRX1
MedgenTPRX1
Genetic Testing Registry TPRX1
NextProtQ8N7U7 [Medical]
GENETestsTPRX1
Target ValidationTPRX1
Huge Navigator TPRX1 [HugePedia]
ClinGenTPRX1
Clinical trials, drugs, therapy
MyCancerGenomeTPRX1
Protein Interactions : CTDTPRX1
Pharm GKB GenePA142670706
PharosQ8N7U7
Clinical trialTPRX1
Miscellaneous
canSAR (ICR)TPRX1
HarmonizomeTPRX1
DataMed IndexTPRX1
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTPRX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:38 CEST 2021

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