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TPRXL (tetrapeptide repeat homeobox like)

Identity

Alias_symbol (synonym)FLJ35107
TPRX3P
Other alias
HGNC (Hugo) TPRXL
LocusID (NCBI) 348825
Atlas_Id 75085
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 13937307 and ends at 14065981 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPRXL   32178
Cards
Entrez_Gene (NCBI)TPRXL  348825  tetrapeptide repeat homeobox like
AliasesTPRX3P
GeneCards (Weizmann)TPRXL
Ensembl hg19 (Hinxton)ENSG00000180438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180438 [Gene_View]  chr3:13937307-14065981 [Contig_View]  TPRXL [Vega]
ICGC DataPortalENSG00000180438
TCGA cBioPortalTPRXL
AceView (NCBI)TPRXL
Genatlas (Paris)TPRXL
WikiGenes348825
SOURCE (Princeton)TPRXL
Genetics Home Reference (NIH)TPRXL
Genomic and cartography
GoldenPath hg38 (UCSC)TPRXL  -     chr3:13937307-14065981 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPRXL  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblTPRXL - 3p25.1 [CytoView hg19]  TPRXL - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBITPRXL [Mapview hg19]  TPRXL [Mapview hg38]
OMIM611167   
Gene and transcription
Genbank (Entrez)AK092426 BC016304 BC027729 BC117319 DA837466
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPRXL
Cluster EST : UnigeneHs.638296 [ NCBI ]
CGAP (NCI)Hs.638296
Alternative Splicing GalleryENSG00000180438
Gene ExpressionTPRXL [ NCBI-GEO ]   TPRXL [ EBI - ARRAY_EXPRESS ]   TPRXL [ SEEK ]   TPRXL [ MEM ]
Gene Expression Viewer (FireBrowse)TPRXL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348825
GTEX Portal (Tissue expression)TPRXL
Human Protein AtlasENSG00000180438-TPRXL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RH7
Splice isoforms : SwissVarQ17RH7
PhosPhoSitePlusQ17RH7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPRXL
DMDM Disease mutations348825
Blocks (Seattle)TPRXL
SuperfamilyQ17RH7
Human Protein Atlas [tissue]ENSG00000180438-TPRXL [tissue]
Peptide AtlasQ17RH7
IPIIPI00744971   
Protein Interaction databases
DIP (DOE-UCLA)Q17RH7
IntAct (EBI)Q17RH7
FunCoupENSG00000180438
BioGRIDTPRXL
STRING (EMBL)TPRXL
ZODIACTPRXL
Ontologies - Pathways
QuickGOQ17RH7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTPRXL
Atlas of Cancer Signalling NetworkTPRXL
Wikipedia pathwaysTPRXL
Orthology - Evolution
OrthoDB348825
GeneTree (enSembl)ENSG00000180438
Phylogenetic Trees/Animal Genes : TreeFamTPRXL
HOVERGENQ17RH7
HOGENOMQ17RH7
Homologs : HomoloGeneTPRXL
Homology/Alignments : Family Browser (UCSC)TPRXL
Gene fusions - Rearrangements
Fusion: Tumor Portal TPRXL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPRXL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPRXL
dbVarTPRXL
ClinVarTPRXL
1000_GenomesTPRXL 
Exome Variant ServerTPRXL
ExAC (Exome Aggregation Consortium)ENSG00000180438
GNOMAD BrowserENSG00000180438
Genetic variants : HAPMAP348825
Genomic Variants (DGV)TPRXL [DGVbeta]
DECIPHERTPRXL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPRXL 
Mutations
ICGC Data PortalTPRXL 
TCGA Data PortalTPRXL 
Broad Tumor PortalTPRXL
OASIS PortalTPRXL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPRXL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPRXL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPRXL
DgiDB (Drug Gene Interaction Database)TPRXL
DoCM (Curated mutations)TPRXL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPRXL (select a term)
intoGenTPRXL
Cancer3DTPRXL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611167   
Orphanet
MedgenTPRXL
Genetic Testing Registry TPRXL
NextProtQ17RH7 [Medical]
TSGene348825
GENETestsTPRXL
Target ValidationTPRXL
Huge Navigator TPRXL [HugePedia]
snp3D : Map Gene to Disease348825
BioCentury BCIQTPRXL
ClinGenTPRXL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348825
Chemical/Pharm GKB GenePA142670710
Clinical trialTPRXL
Miscellaneous
canSAR (ICR)TPRXL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPRXL
EVEXTPRXL
GoPubMedTPRXL
iHOPTPRXL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:33:41 CET 2017

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