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TPSD1 (tryptase delta 1)

Identity

Other aliasMCP7-LIKE
MCP7L1
MMCP-7L
HGNC (Hugo) TPSD1
LocusID (NCBI) 23430
Atlas_Id 75087
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1256272 and ends at 1258493 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPSD1   14118
Cards
Entrez_Gene (NCBI)TPSD1  23430  tryptase delta 1
AliasesMCP7-LIKE; MCP7L1; MMCP-7L
GeneCards (Weizmann)TPSD1
Ensembl hg19 (Hinxton)ENSG00000095917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095917 [Gene_View]  chr16:1256272-1258493 [Contig_View]  TPSD1 [Vega]
ICGC DataPortalENSG00000095917
TCGA cBioPortalTPSD1
AceView (NCBI)TPSD1
Genatlas (Paris)TPSD1
WikiGenes23430
SOURCE (Princeton)TPSD1
Genetics Home Reference (NIH)TPSD1
Genomic and cartography
GoldenPath hg38 (UCSC)TPSD1  -     chr16:1256272-1258493 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPSD1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblTPSD1 - 16p13.3 [CytoView hg19]  TPSD1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBITPSD1 [Mapview hg19]  TPSD1 [Mapview hg38]
OMIM609272   
Gene and transcription
Genbank (Entrez)AF206664 AF421357 AY055427 BC069143
RefSeq transcript (Entrez)NM_012217
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPSD1
Cluster EST : UnigeneHs.677789 [ NCBI ]
CGAP (NCI)Hs.677789
Alternative Splicing GalleryENSG00000095917
Gene ExpressionTPSD1 [ NCBI-GEO ]   TPSD1 [ EBI - ARRAY_EXPRESS ]   TPSD1 [ SEEK ]   TPSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23430
GTEX Portal (Tissue expression)TPSD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZJ3
Splice isoforms : SwissVarQ9BZJ3
Catalytic activity : Enzyme3.4.21.59 [ Enzyme-Expasy ]   3.4.21.593.4.21.59 [ IntEnz-EBI ]   3.4.21.59 [ BRENDA ]   3.4.21.59 [ KEGG ]   
PhosPhoSitePlusQ9BZJ3
Domaine pattern : Prosite (Expaxy)TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00089   
Domain families : Smart (EMBL)Tryp_SPc (SM00020)  
Conserved Domain (NCBI)TPSD1
DMDM Disease mutations23430
Blocks (Seattle)TPSD1
SuperfamilyQ9BZJ3
Human Protein AtlasENSG00000095917
Peptide AtlasQ9BZJ3
HPRD08345
IPIIPI00419573   IPI00376200   IPI00953339   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZJ3
IntAct (EBI)Q9BZJ3
FunCoupENSG00000095917
BioGRIDTPSD1
STRING (EMBL)TPSD1
ZODIACTPSD1
Ontologies - Pathways
QuickGOQ9BZJ3
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  proteolysis  serine-type peptidase activity  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  proteolysis  serine-type peptidase activity  
NDEx NetworkTPSD1
Atlas of Cancer Signalling NetworkTPSD1
Wikipedia pathwaysTPSD1
Orthology - Evolution
OrthoDB23430
GeneTree (enSembl)ENSG00000095917
Phylogenetic Trees/Animal Genes : TreeFamTPSD1
HOVERGENQ9BZJ3
HOGENOMQ9BZJ3
Homologs : HomoloGeneTPSD1
Homology/Alignments : Family Browser (UCSC)TPSD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPSD1
dbVarTPSD1
ClinVarTPSD1
1000_GenomesTPSD1 
Exome Variant ServerTPSD1
ExAC (Exome Aggregation Consortium)TPSD1 (select the gene name)
Genetic variants : HAPMAP23430
Genomic Variants (DGV)TPSD1 [DGVbeta]
DECIPHERTPSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPSD1 
Mutations
ICGC Data PortalTPSD1 
TCGA Data PortalTPSD1 
Broad Tumor PortalTPSD1
OASIS PortalTPSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPSD1
DgiDB (Drug Gene Interaction Database)TPSD1
DoCM (Curated mutations)TPSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPSD1 (select a term)
intoGenTPSD1
Cancer3DTPSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609272   
Orphanet
MedgenTPSD1
Genetic Testing Registry TPSD1
NextProtQ9BZJ3 [Medical]
TSGene23430
GENETestsTPSD1
Target ValidationTPSD1
Huge Navigator TPSD1 [HugePedia]
snp3D : Map Gene to Disease23430
BioCentury BCIQTPSD1
ClinGenTPSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23430
Chemical/Pharm GKB GenePA37845
Clinical trialTPSD1
Miscellaneous
canSAR (ICR)TPSD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPSD1
EVEXTPSD1
GoPubMedTPSD1
iHOPTPSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:50 CEST 2017

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