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TPST1 (tyrosylprotein sulfotransferase 1)

Identity

Alias_symbol (synonym)TANGO13A
Other alias
HGNC (Hugo) TPST1
LocusID (NCBI) 8460
Atlas_Id 53753
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 65670259 and ends at 65825438 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TPST1 (7q11.21) / APC (5q22.2)TPST1 (7q11.21) / TPST1 (7q11.21)WARS2 (1p12) / TPST1 (7q11.21)
ZSCAN25 (7q22.1) / TPST1 (7q11.21)WARS2 1p12 / TPST1 7q11.21ZNF498 TPST1 7q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPST1   12020
Cards
Entrez_Gene (NCBI)TPST1  8460  tyrosylprotein sulfotransferase 1
AliasesTANGO13A
GeneCards (Weizmann)TPST1
Ensembl hg19 (Hinxton)ENSG00000169902 [Gene_View]  chr7:65670259-65825438 [Contig_View]  TPST1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169902 [Gene_View]  chr7:65670259-65825438 [Contig_View]  TPST1 [Vega]
ICGC DataPortalENSG00000169902
TCGA cBioPortalTPST1
AceView (NCBI)TPST1
Genatlas (Paris)TPST1
WikiGenes8460
SOURCE (Princeton)TPST1
Genetics Home Reference (NIH)TPST1
Genomic and cartography
GoldenPath hg19 (UCSC)TPST1  -     chr7:65670259-65825438 +  7q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TPST1  -     7q11.21   [Description]    (hg38-Dec_2013)
EnsemblTPST1 - 7q11.21 [CytoView hg19]  TPST1 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBITPST1 [Mapview hg19]  TPST1 [Mapview hg38]
OMIM603125   
Gene and transcription
Genbank (Entrez)AF038009 AI221558 AK095722 AK307053 AK313098
RefSeq transcript (Entrez)NM_003596
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)TPST1
Cluster EST : UnigeneHs.421194 [ NCBI ]
CGAP (NCI)Hs.421194
Alternative Splicing GalleryENSG00000169902
Gene ExpressionTPST1 [ NCBI-GEO ]   TPST1 [ EBI - ARRAY_EXPRESS ]   TPST1 [ SEEK ]   TPST1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPST1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8460
GTEX Portal (Tissue expression)TPST1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60507   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60507
Splice isoforms : SwissVarO60507
Catalytic activity : Enzyme2.8.2.20 [ Enzyme-Expasy ]   2.8.2.202.8.2.20 [ IntEnz-EBI ]   2.8.2.20 [ BRENDA ]   2.8.2.20 [ KEGG ]   
PhosPhoSitePlusO60507
Domains : Interpro (EBI)P-loop_NTPase    TPST   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPST1
DMDM Disease mutations8460
Blocks (Seattle)TPST1
SuperfamilyO60507
Human Protein AtlasENSG00000169902
Peptide AtlasO60507
HPRD07216
IPIIPI00030106   IPI00926746   IPI00926521   
Protein Interaction databases
DIP (DOE-UCLA)O60507
IntAct (EBI)O60507
FunCoupENSG00000169902
BioGRIDTPST1
STRING (EMBL)TPST1
ZODIACTPST1
Ontologies - Pathways
QuickGOO60507
Ontology : AmiGOGolgi membrane  Golgi apparatus  peptidyl-tyrosine sulfation  inflammatory response  protein-tyrosine sulfotransferase activity  membrane  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  peptidyl-tyrosine sulfation  inflammatory response  protein-tyrosine sulfotransferase activity  membrane  integral component of membrane  
NDEx NetworkTPST1
Atlas of Cancer Signalling NetworkTPST1
Wikipedia pathwaysTPST1
Orthology - Evolution
OrthoDB8460
GeneTree (enSembl)ENSG00000169902
Phylogenetic Trees/Animal Genes : TreeFamTPST1
HOVERGENO60507
HOGENOMO60507
Homologs : HomoloGeneTPST1
Homology/Alignments : Family Browser (UCSC)TPST1
Gene fusions - Rearrangements
Fusion : MitelmanWARS2/TPST1 [1p12/7q11.21]  [t(1;7)(p12;q11)]  
Fusion : MitelmanZSCAN25/TPST1 [7q22.1/7q11.21]  [t(7;7)(q11;q22)]  
Fusion: TCGAWARS2 1p12 TPST1 7q11.21 BRCA
Fusion: TCGAZNF498 TPST1 7q11.21 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPST1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPST1
dbVarTPST1
ClinVarTPST1
1000_GenomesTPST1 
Exome Variant ServerTPST1
ExAC (Exome Aggregation Consortium)TPST1 (select the gene name)
Genetic variants : HAPMAP8460
Genomic Variants (DGV)TPST1 [DGVbeta]
DECIPHER (Syndromes)7:65670259-65825438  ENSG00000169902
CONAN: Copy Number AnalysisTPST1 
Mutations
ICGC Data PortalTPST1 
TCGA Data PortalTPST1 
Broad Tumor PortalTPST1
OASIS PortalTPST1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPST1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPST1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPST1
DgiDB (Drug Gene Interaction Database)TPST1
DoCM (Curated mutations)TPST1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPST1 (select a term)
intoGenTPST1
Cancer3DTPST1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603125   
Orphanet
MedgenTPST1
Genetic Testing Registry TPST1
NextProtO60507 [Medical]
TSGene8460
GENETestsTPST1
Huge Navigator TPST1 [HugePedia]
snp3D : Map Gene to Disease8460
BioCentury BCIQTPST1
ClinGenTPST1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8460
Chemical/Pharm GKB GenePA36699
Clinical trialTPST1
Miscellaneous
canSAR (ICR)TPST1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPST1
EVEXTPST1
GoPubMedTPST1
iHOPTPST1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:14 CEST 2017

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