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TPST2 (tyrosylprotein sulfotransferase 2)

Identity

Alias_symbol (synonym)TANGO13B
Other alias
HGNC (Hugo) TPST2
LocusID (NCBI) 8459
Atlas_Id 54719
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 26921714 and ends at 26961370 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SFI1 (22q12.2) / TPST2 (22q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPST2   12021
Cards
Entrez_Gene (NCBI)TPST2  8459  tyrosylprotein sulfotransferase 2
AliasesTANGO13B
GeneCards (Weizmann)TPST2
Ensembl hg19 (Hinxton)ENSG00000128294 [Gene_View]  chr22:26921714-26961370 [Contig_View]  TPST2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128294 [Gene_View]  chr22:26921714-26961370 [Contig_View]  TPST2 [Vega]
ICGC DataPortalENSG00000128294
TCGA cBioPortalTPST2
AceView (NCBI)TPST2
Genatlas (Paris)TPST2
WikiGenes8459
SOURCE (Princeton)TPST2
Genetics Home Reference (NIH)TPST2
Genomic and cartography
GoldenPath hg19 (UCSC)TPST2  -     chr22:26921714-26961370 -  22q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TPST2  -     22q12.1   [Description]    (hg38-Dec_2013)
EnsemblTPST2 - 22q12.1 [CytoView hg19]  TPST2 - 22q12.1 [CytoView hg38]
Mapping of homologs : NCBITPST2 [Mapview hg19]  TPST2 [Mapview hg38]
OMIM603126   
Gene and transcription
Genbank (Entrez)AA531491 AF049891 AF061254 AJ006198 AK057171
RefSeq transcript (Entrez)NM_001008566 NM_003595
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)TPST2
Cluster EST : UnigeneHs.632768 [ NCBI ]
CGAP (NCI)Hs.632768
Alternative Splicing GalleryENSG00000128294
Gene ExpressionTPST2 [ NCBI-GEO ]   TPST2 [ EBI - ARRAY_EXPRESS ]   TPST2 [ SEEK ]   TPST2 [ MEM ]
Gene Expression Viewer (FireBrowse)TPST2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8459
GTEX Portal (Tissue expression)TPST2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60704   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60704  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60704
Splice isoforms : SwissVarO60704
Catalytic activity : Enzyme2.8.2.20 [ Enzyme-Expasy ]   2.8.2.202.8.2.20 [ IntEnz-EBI ]   2.8.2.20 [ BRENDA ]   2.8.2.20 [ KEGG ]   
PhosPhoSitePlusO60704
Domains : Interpro (EBI)P-loop_NTPase    TPST   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPST2
DMDM Disease mutations8459
Blocks (Seattle)TPST2
PDB (SRS)3AP1    3AP2    3AP3   
PDB (PDBSum)3AP1    3AP2    3AP3   
PDB (IMB)3AP1    3AP2    3AP3   
PDB (RSDB)3AP1    3AP2    3AP3   
Structural Biology KnowledgeBase3AP1    3AP2    3AP3   
SCOP (Structural Classification of Proteins)3AP1    3AP2    3AP3   
CATH (Classification of proteins structures)3AP1    3AP2    3AP3   
SuperfamilyO60704
Human Protein AtlasENSG00000128294
Peptide AtlasO60704
HPRD07217
IPIIPI00031421   IPI01009920   IPI00880090   IPI00877651   IPI00877803   IPI00878486   IPI00878149   IPI00879185   
Protein Interaction databases
DIP (DOE-UCLA)O60704
IntAct (EBI)O60704
FunCoupENSG00000128294
BioGRIDTPST2
STRING (EMBL)TPST2
ZODIACTPST2
Ontologies - Pathways
QuickGOO60704
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  Golgi apparatus  peptidyl-tyrosine sulfation  protein-tyrosine sulfotransferase activity  membrane  integral component of membrane  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  Golgi apparatus  peptidyl-tyrosine sulfation  protein-tyrosine sulfotransferase activity  membrane  integral component of membrane  extracellular exosome  
NDEx NetworkTPST2
Atlas of Cancer Signalling NetworkTPST2
Wikipedia pathwaysTPST2
Orthology - Evolution
OrthoDB8459
GeneTree (enSembl)ENSG00000128294
Phylogenetic Trees/Animal Genes : TreeFamTPST2
HOVERGENO60704
HOGENOMO60704
Homologs : HomoloGeneTPST2
Homology/Alignments : Family Browser (UCSC)TPST2
Gene fusions - Rearrangements
Fusion : MitelmanSFI1/TPST2 [22q12.2/22q12.1]  [inv(22)(q12q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPST2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPST2
dbVarTPST2
ClinVarTPST2
1000_GenomesTPST2 
Exome Variant ServerTPST2
ExAC (Exome Aggregation Consortium)TPST2 (select the gene name)
Genetic variants : HAPMAP8459
Genomic Variants (DGV)TPST2 [DGVbeta]
DECIPHER (Syndromes)22:26921714-26961370  ENSG00000128294
CONAN: Copy Number AnalysisTPST2 
Mutations
ICGC Data PortalTPST2 
TCGA Data PortalTPST2 
Broad Tumor PortalTPST2
OASIS PortalTPST2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTPST2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTPST2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPST2
DgiDB (Drug Gene Interaction Database)TPST2
DoCM (Curated mutations)TPST2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPST2 (select a term)
intoGenTPST2
Cancer3DTPST2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603126   
Orphanet
MedgenTPST2
Genetic Testing Registry TPST2
NextProtO60704 [Medical]
TSGene8459
GENETestsTPST2
Huge Navigator TPST2 [HugePedia]
snp3D : Map Gene to Disease8459
BioCentury BCIQTPST2
ClinGenTPST2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8459
Chemical/Pharm GKB GenePA36700
Clinical trialTPST2
Miscellaneous
canSAR (ICR)TPST2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPST2
EVEXTPST2
GoPubMedTPST2
iHOPTPST2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:14 CEST 2017

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