Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TPT1-AS1 (TPT1 antisense RNA 1)


Alias (NCBI)-
HGNC (Hugo) TPT1-AS1
HGNC Previous nameTPT1 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 100190939
Atlas_Id 57907
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 45341345 and ends at 45391483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)TPT1-AS1   43686
Entrez_Gene (NCBI)TPT1-AS1    TPT1 antisense RNA 1
GeneCards (Weizmann)TPT1-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:45341345-45391483 [Contig_View]  TPT1-AS1 [Vega]
TCGA cBioPortalTPT1-AS1
AceView (NCBI)TPT1-AS1
Genatlas (Paris)TPT1-AS1
SOURCE (Princeton)TPT1-AS1
Genetics Home Reference (NIH)TPT1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TPT1-AS1  -     chr13:45341345-45391483 +  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPT1-AS1  -     13q14.13   [Description]    (hg19-Feb_2009)
GoldenPathTPT1-AS1 - 13q14.13 [CytoView hg19]  TPT1-AS1 - 13q14.13 [CytoView hg38]
Genome Data Viewer NCBITPT1-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF318337 AK055081 AK124332 AK127569 BC004792
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TPT1-AS1
Gene ExpressionTPT1-AS1 [ NCBI-GEO ]   TPT1-AS1 [ EBI - ARRAY_EXPRESS ]   TPT1-AS1 [ SEEK ]   TPT1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPT1-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of TPT1-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100190939
GTEX Portal (Tissue expression)TPT1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPT1-AS1
Protein Interaction databases
Ontologies - Pathways
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:04 CEST 2021

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