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TPT1P8 (tumor protein, translationally-controlled 1 pseudogene 8)

Identity

Alias_symbol (synonym)FKSG2
Other alias
HGNC (Hugo) TPT1P8
LocusID (NCBI) 59347
Atlas_Id 51588
Location 8p11.23  [Link to chromosome band 8p11]
Location_base_pair Starts at 36888481 and ends at 36889310 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TPT1P8   24088
Cards
Entrez_Gene (NCBI)TPT1P8  59347  tumor protein, translationally-controlled 1 pseudogene 8
AliasesFKSG2
GeneCards (Weizmann)TPT1P8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:36888481-36889310 [Contig_View]  TPT1P8 [Vega]
TCGA cBioPortalTPT1P8
AceView (NCBI)TPT1P8
Genatlas (Paris)TPT1P8
WikiGenes59347
SOURCE (Princeton)TPT1P8
Genetics Home Reference (NIH)TPT1P8
Genomic and cartography
GoldenPath hg38 (UCSC)TPT1P8  -     chr8:36888481-36889310 +  8p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPT1P8  -     8p11.23   [Description]    (hg19-Feb_2009)
EnsemblTPT1P8 - 8p11.23 [CytoView hg19]  TPT1P8 - 8p11.23 [CytoView hg38]
Mapping of homologs : NCBITPT1P8 [Mapview hg19]  TPT1P8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF300871
RefSeq transcript (Entrez)NM_021631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPT1P8
Gene ExpressionTPT1P8 [ NCBI-GEO ]   TPT1P8 [ EBI - ARRAY_EXPRESS ]   TPT1P8 [ SEEK ]   TPT1P8 [ MEM ]
Gene Expression Viewer (FireBrowse)TPT1P8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59347
GTEX Portal (Tissue expression)TPT1P8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAU6
Splice isoforms : SwissVarQ9HAU6
PhosPhoSitePlusQ9HAU6
Domaine pattern : Prosite (Expaxy)TCTP_3 (PS51797)   
Domains : Interpro (EBI)Mss4-like    Mss4/transl-control_tumor    Translational_control_tumour_p   
Domain families : Pfam (Sanger)TCTP (PF00838)   
Domain families : Pfam (NCBI)pfam00838   
Conserved Domain (NCBI)TPT1P8
DMDM Disease mutations59347
Blocks (Seattle)TPT1P8
SuperfamilyQ9HAU6
Peptide AtlasQ9HAU6
HPRD16902
IPIIPI00012453   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAU6
IntAct (EBI)Q9HAU6
BioGRIDTPT1P8
STRING (EMBL)TPT1P8
ZODIACTPT1P8
Ontologies - Pathways
QuickGOQ9HAU6
Ontology : AmiGOcalcium ion binding  cytoplasm  apoptotic process  microtubule binding  cell differentiation  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  apoptotic process  microtubule binding  cell differentiation  
NDEx NetworkTPT1P8
Atlas of Cancer Signalling NetworkTPT1P8
Wikipedia pathwaysTPT1P8
Orthology - Evolution
OrthoDB59347
Phylogenetic Trees/Animal Genes : TreeFamTPT1P8
HOVERGENQ9HAU6
HOGENOMQ9HAU6
Homologs : HomoloGeneTPT1P8
Homology/Alignments : Family Browser (UCSC)TPT1P8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPT1P8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPT1P8
dbVarTPT1P8
ClinVarTPT1P8
1000_GenomesTPT1P8 
Exome Variant ServerTPT1P8
ExAC (Exome Aggregation Consortium)TPT1P8 (select the gene name)
Genetic variants : HAPMAP59347
Genomic Variants (DGV)TPT1P8 [DGVbeta]
DECIPHERTPT1P8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPT1P8 
Mutations
ICGC Data PortalTPT1P8 
TCGA Data PortalTPT1P8 
Broad Tumor PortalTPT1P8
OASIS PortalTPT1P8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTPT1P8
BioMutasearch TPT1P8
DgiDB (Drug Gene Interaction Database)TPT1P8
DoCM (Curated mutations)TPT1P8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPT1P8 (select a term)
intoGenTPT1P8
Cancer3DTPT1P8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTPT1P8
Genetic Testing Registry TPT1P8
NextProtQ9HAU6 [Medical]
TSGene59347
GENETestsTPT1P8
Target ValidationTPT1P8
Huge Navigator TPT1P8 [HugePedia]
snp3D : Map Gene to Disease59347
BioCentury BCIQTPT1P8
ClinGenTPT1P8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59347
Clinical trialTPT1P8
Miscellaneous
canSAR (ICR)TPT1P8 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPT1P8
EVEXTPT1P8
GoPubMedTPT1P8
iHOPTPT1P8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:05 CEST 2017

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