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TPTE2P1 (transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1)

Identity

Other alias-
HGNC (Hugo) TPTE2P1
LocusID (NCBI) 646405
Atlas_Id 75090
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 24933744 and ends at 24968472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TPTE2P1   35196
Cards
Entrez_Gene (NCBI)TPTE2P1  646405  transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1
Aliases
GeneCards (Weizmann)TPTE2P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:24933744-24968472 [Contig_View]  TPTE2P1 [Vega]
TCGA cBioPortalTPTE2P1
AceView (NCBI)TPTE2P1
Genatlas (Paris)TPTE2P1
WikiGenes646405
SOURCE (Princeton)TPTE2P1
Genetics Home Reference (NIH)TPTE2P1
Genomic and cartography
GoldenPath hg38 (UCSC)TPTE2P1  -     chr13:24933744-24968472 -  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPTE2P1  -     13q12.13   [Description]    (hg19-Feb_2009)
EnsemblTPTE2P1 - 13q12.13 [CytoView hg19]  TPTE2P1 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBITPTE2P1 [Mapview hg19]  TPTE2P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094224 AK126328 AK297470
RefSeq transcript (Entrez)NM_001126062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPTE2P1
Cluster EST : UnigeneHs.620592 [ NCBI ]
CGAP (NCI)Hs.620592
Gene ExpressionTPTE2P1 [ NCBI-GEO ]   TPTE2P1 [ EBI - ARRAY_EXPRESS ]   TPTE2P1 [ SEEK ]   TPTE2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPTE2P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646405
GTEX Portal (Tissue expression)TPTE2P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6R2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6R2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6R2
Splice isoforms : SwissVarQ5T6R2
PhosPhoSitePlusQ5T6R2
Domaine pattern : Prosite (Expaxy)C2_TENSIN (PS51182)   
Domains : Interpro (EBI)C2_dom    Tensin_C2-dom   
Domain families : Pfam (Sanger)PTEN_C2 (PF10409)   
Domain families : Pfam (NCBI)pfam10409   
Conserved Domain (NCBI)TPTE2P1
DMDM Disease mutations646405
Blocks (Seattle)TPTE2P1
SuperfamilyQ5T6R2
Peptide AtlasQ5T6R2
IPIIPI00514177   IPI00893323   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6R2
IntAct (EBI)Q5T6R2
BioGRIDTPTE2P1
STRING (EMBL)TPTE2P1
ZODIACTPTE2P1
Ontologies - Pathways
QuickGOQ5T6R2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTPTE2P1
Atlas of Cancer Signalling NetworkTPTE2P1
Wikipedia pathwaysTPTE2P1
Orthology - Evolution
OrthoDB646405
Phylogenetic Trees/Animal Genes : TreeFamTPTE2P1
HOVERGENQ5T6R2
HOGENOMQ5T6R2
Homologs : HomoloGeneTPTE2P1
Homology/Alignments : Family Browser (UCSC)TPTE2P1
Gene fusions - Rearrangements
Tumor Fusion PortalTPTE2P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTPTE2P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TPTE2P1
dbVarTPTE2P1
ClinVarTPTE2P1
1000_GenomesTPTE2P1 
Exome Variant ServerTPTE2P1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP646405
Genomic Variants (DGV)TPTE2P1 [DGVbeta]
DECIPHERTPTE2P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTPTE2P1 
Mutations
ICGC Data PortalTPTE2P1 
TCGA Data PortalTPTE2P1 
Broad Tumor PortalTPTE2P1
OASIS PortalTPTE2P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTPTE2P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TPTE2P1
DgiDB (Drug Gene Interaction Database)TPTE2P1
DoCM (Curated mutations)TPTE2P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TPTE2P1 (select a term)
intoGenTPTE2P1
Cancer3DTPTE2P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTPTE2P1
MedgenTPTE2P1
Genetic Testing Registry TPTE2P1
NextProtQ5T6R2 [Medical]
TSGene646405
GENETestsTPTE2P1
Target ValidationTPTE2P1
Huge Navigator TPTE2P1 [HugePedia]
snp3D : Map Gene to Disease646405
BioCentury BCIQTPTE2P1
ClinGenTPTE2P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646405
Chemical/Pharm GKB GenePA164726706
Clinical trialTPTE2P1
Miscellaneous
canSAR (ICR)TPTE2P1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPTE2P1
EVEXTPTE2P1
GoPubMedTPTE2P1
iHOPTPTE2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:19:28 CET 2017

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