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TRA-AGC11-1 (transfer RNA-Ala (AGC) 11-1)

Identity

Alias_namesTRNAA2
transfer RNA alanine 2 (anticodon AGC)
Other alias
HGNC (Hugo) TRA-AGC11-1
LocusID (NCBI) 100009603
Atlas_Id 79755
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26571864 and ends at 26571936 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRA-AGC11-1   33253
Cards
Entrez_Gene (NCBI)TRA-AGC11-1  100009603  transfer RNA-Ala (AGC) 11-1
AliasesTRNAA2
GeneCards (Weizmann)TRA-AGC11-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:26571864-26571936 [Contig_View]  TRA-AGC11-1 [Vega]
TCGA cBioPortalTRA-AGC11-1
AceView (NCBI)TRA-AGC11-1
Genatlas (Paris)TRA-AGC11-1
WikiGenes100009603
SOURCE (Princeton)TRA-AGC11-1
Genetics Home Reference (NIH)TRA-AGC11-1
Genomic and cartography
GoldenPath hg38 (UCSC)TRA-AGC11-1  -     chr6:26571864-26571936 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRA-AGC11-1  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblTRA-AGC11-1 - 6p22.2 [CytoView hg19]  TRA-AGC11-1 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBITRA-AGC11-1 [Mapview hg19]  TRA-AGC11-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)M17880
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRA-AGC11-1
Gene ExpressionTRA-AGC11-1 [ NCBI-GEO ]   TRA-AGC11-1 [ EBI - ARRAY_EXPRESS ]   TRA-AGC11-1 [ SEEK ]   TRA-AGC11-1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRA-AGC11-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100009603
GTEX Portal (Tissue expression)TRA-AGC11-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRA-AGC11-1
DMDM Disease mutations100009603
Blocks (Seattle)TRA-AGC11-1
Protein Interaction databases
BioGRIDTRA-AGC11-1
STRING (EMBL)TRA-AGC11-1
ZODIACTRA-AGC11-1
Ontologies - Pathways
Huge Navigator TRA-AGC11-1 [HugePedia]
snp3D : Map Gene to Disease100009603
BioCentury BCIQTRA-AGC11-1
ClinGenTRA-AGC11-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100009603
Chemical/Pharm GKB GenePA162407091
Clinical trialTRA-AGC11-1
Miscellaneous
canSAR (ICR)TRA-AGC11-1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRA-AGC11-1
EVEXTRA-AGC11-1
GoPubMedTRA-AGC11-1
iHOPTRA-AGC11-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:36:20 CEST 2018

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