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TRABD (TraB domain containing)

Identity

Alias (NCBI)LP6054
PP2447
HGNC (Hugo) TRABD
HGNC Alias symbPP2447
LocusID (NCBI) 80305
Atlas_Id 75095
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50185913 and ends at 50199594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FSHR (2p16.3) / TRABD (22q13.33)TRABD (22q13.33) / DDR2 (1q23.3)TRABD (22q13.33) / TRABD (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRABD   28805
Cards
Entrez_Gene (NCBI)TRABD    TraB domain containing
AliasesLP6054; PP2447
GeneCards (Weizmann)TRABD
Ensembl hg19 (Hinxton)ENSG00000170638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170638 [Gene_View]  ENSG00000170638 [Sequence]  chr22:50185913-50199594 [Contig_View]  TRABD [Vega]
ICGC DataPortalENSG00000170638
TCGA cBioPortalTRABD
AceView (NCBI)TRABD
Genatlas (Paris)TRABD
SOURCE (Princeton)TRABD
Genetics Home Reference (NIH)TRABD
Genomic and cartography
GoldenPath hg38 (UCSC)TRABD  -     chr22:50185913-50199594 +  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRABD  -     22q13.33   [Description]    (hg19-Feb_2009)
GoldenPathTRABD - 22q13.33 [CytoView hg19]  TRABD - 22q13.33 [CytoView hg38]
ImmunoBaseENSG00000170638
Genome Data Viewer NCBITRABD [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA737056 AF218001 AK024447 AK292050 AL449244
RefSeq transcript (Entrez)NM_001320484 NM_001320485 NM_001320487 NM_001320488 NM_001378762 NM_001378765 NM_025204
Consensus coding sequences : CCDS (NCBI)TRABD
Gene ExpressionTRABD [ NCBI-GEO ]   TRABD [ EBI - ARRAY_EXPRESS ]   TRABD [ SEEK ]   TRABD [ MEM ]
Gene Expression Viewer (FireBrowse)TRABD [ Firebrowse - Broad ]
GenevisibleExpression of TRABD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80305
GTEX Portal (Tissue expression)TRABD
Human Protein AtlasENSG00000170638-TRABD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4I3
PhosPhoSitePlusQ9H4I3
Domains : Interpro (EBI)TraB/PrgY/gumN_fam   
Domain families : Pfam (Sanger)TraB (PF01963)   
Domain families : Pfam (NCBI)pfam01963   
Conserved Domain (NCBI)TRABD
SuperfamilyQ9H4I3
AlphaFold pdb e-kbQ9H4I3   
Human Protein Atlas [tissue]ENSG00000170638-TRABD [tissue]
HPRD11450
Protein Interaction databases
DIP (DOE-UCLA)Q9H4I3
IntAct (EBI)Q9H4I3
BioGRIDTRABD
STRING (EMBL)TRABD
ZODIACTRABD
Ontologies - Pathways
QuickGOQ9H4I3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTRABD
Atlas of Cancer Signalling NetworkTRABD
Wikipedia pathwaysTRABD
Orthology - Evolution
OrthoDB80305
GeneTree (enSembl)ENSG00000170638
Phylogenetic Trees/Animal Genes : TreeFamTRABD
Homologs : HomoloGeneTRABD
Homology/Alignments : Family Browser (UCSC)TRABD
Gene fusions - Rearrangements
Fusion : QuiverTRABD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRABD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRABD
dbVarTRABD
ClinVarTRABD
MonarchTRABD
1000_GenomesTRABD 
Exome Variant ServerTRABD
GNOMAD BrowserENSG00000170638
Varsome BrowserTRABD
ACMGTRABD variants
VarityQ9H4I3
Genomic Variants (DGV)TRABD [DGVbeta]
DECIPHERTRABD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRABD 
Mutations
ICGC Data PortalTRABD 
TCGA Data PortalTRABD 
Broad Tumor PortalTRABD
OASIS PortalTRABD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRABD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRABD
Mutations and Diseases : HGMDTRABD
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRABD
DgiDB (Drug Gene Interaction Database)TRABD
DoCM (Curated mutations)TRABD
CIViC (Clinical Interpretations of Variants in Cancer)TRABD
Cancer3DTRABD
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRABD
MedgenTRABD
Genetic Testing Registry TRABD
NextProtQ9H4I3 [Medical]
GENETestsTRABD
Target ValidationTRABD
Huge Navigator TRABD [HugePedia]
ClinGenTRABD
Clinical trials, drugs, therapy
MyCancerGenomeTRABD
Protein Interactions : CTDTRABD
Pharm GKB GenePA145147893
PharosQ9H4I3
Clinical trialTRABD
Miscellaneous
canSAR (ICR)TRABD
HarmonizomeTRABD
DataMed IndexTRABD
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRABD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:41 CEST 2021

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