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TRABD (TraB domain containing)

Identity

Alias_symbol (synonym)PP2447
Other aliasLP6054
HGNC (Hugo) TRABD
LocusID (NCBI) 80305
Atlas_Id 75095
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50185912 and ends at 50199599 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FSHR (2p16.3) / TRABD (22q13.33)TRABD (22q13.33) / DDR2 (1q23.3)TRABD (22q13.33) / TRABD (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRABD   28805
Cards
Entrez_Gene (NCBI)TRABD  80305  TraB domain containing
AliasesLP6054; PP2447
GeneCards (Weizmann)TRABD
Ensembl hg19 (Hinxton)ENSG00000170638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170638 [Gene_View]  chr22:50185912-50199599 [Contig_View]  TRABD [Vega]
ICGC DataPortalENSG00000170638
TCGA cBioPortalTRABD
AceView (NCBI)TRABD
Genatlas (Paris)TRABD
WikiGenes80305
SOURCE (Princeton)TRABD
Genetics Home Reference (NIH)TRABD
Genomic and cartography
GoldenPath hg38 (UCSC)TRABD  -     chr22:50185912-50199599 +  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRABD  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblTRABD - 22q13.33 [CytoView hg19]  TRABD - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBITRABD [Mapview hg19]  TRABD [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA737056 AF218001 AK024447 AK292050 AL449244
RefSeq transcript (Entrez)NM_001320484 NM_001320485 NM_001320487 NM_001320488 NM_025204
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRABD
Cluster EST : UnigeneHs.517731 [ NCBI ]
CGAP (NCI)Hs.517731
Alternative Splicing GalleryENSG00000170638
Gene ExpressionTRABD [ NCBI-GEO ]   TRABD [ EBI - ARRAY_EXPRESS ]   TRABD [ SEEK ]   TRABD [ MEM ]
Gene Expression Viewer (FireBrowse)TRABD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80305
GTEX Portal (Tissue expression)TRABD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4I3
Splice isoforms : SwissVarQ9H4I3
PhosPhoSitePlusQ9H4I3
Domains : Interpro (EBI)Pheromone_shutdown_TraB   
Domain families : Pfam (Sanger)TraB (PF01963)   
Domain families : Pfam (NCBI)pfam01963   
Conserved Domain (NCBI)TRABD
DMDM Disease mutations80305
Blocks (Seattle)TRABD
SuperfamilyQ9H4I3
Human Protein AtlasENSG00000170638
Peptide AtlasQ9H4I3
HPRD11450
IPIIPI00008732   IPI00748784   IPI00387093   IPI00852851   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4I3
IntAct (EBI)Q9H4I3
FunCoupENSG00000170638
BioGRIDTRABD
STRING (EMBL)TRABD
ZODIACTRABD
Ontologies - Pathways
QuickGOQ9H4I3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTRABD
Atlas of Cancer Signalling NetworkTRABD
Wikipedia pathwaysTRABD
Orthology - Evolution
OrthoDB80305
GeneTree (enSembl)ENSG00000170638
Phylogenetic Trees/Animal Genes : TreeFamTRABD
HOVERGENQ9H4I3
HOGENOMQ9H4I3
Homologs : HomoloGeneTRABD
Homology/Alignments : Family Browser (UCSC)TRABD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRABD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRABD
dbVarTRABD
ClinVarTRABD
1000_GenomesTRABD 
Exome Variant ServerTRABD
ExAC (Exome Aggregation Consortium)TRABD (select the gene name)
Genetic variants : HAPMAP80305
Genomic Variants (DGV)TRABD [DGVbeta]
DECIPHERTRABD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRABD 
Mutations
ICGC Data PortalTRABD 
TCGA Data PortalTRABD 
Broad Tumor PortalTRABD
OASIS PortalTRABD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRABD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRABD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRABD
DgiDB (Drug Gene Interaction Database)TRABD
DoCM (Curated mutations)TRABD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRABD (select a term)
intoGenTRABD
Cancer3DTRABD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRABD
Genetic Testing Registry TRABD
NextProtQ9H4I3 [Medical]
TSGene80305
GENETestsTRABD
Target ValidationTRABD
Huge Navigator TRABD [HugePedia]
snp3D : Map Gene to Disease80305
BioCentury BCIQTRABD
ClinGenTRABD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80305
Chemical/Pharm GKB GenePA145147893
Clinical trialTRABD
Miscellaneous
canSAR (ICR)TRABD (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRABD
EVEXTRABD
GoPubMedTRABD
iHOPTRABD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:42:22 CEST 2017

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