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TRABD2A (TraB domain containing 2A)

Identity

Alias_namesC2orf89
chromosome 2 open reading frame 89
Alias_symbol (synonym)TIKI1
Other alias
HGNC (Hugo) TRABD2A
LocusID (NCBI) 129293
Atlas_Id 75096
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 84821667 and ends at 84881245 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRABD2A   27013
Cards
Entrez_Gene (NCBI)TRABD2A  129293  TraB domain containing 2A
AliasesC2orf89; TIKI1
GeneCards (Weizmann)TRABD2A
Ensembl hg19 (Hinxton)ENSG00000186854 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186854 [Gene_View]  chr2:84821667-84881245 [Contig_View]  TRABD2A [Vega]
ICGC DataPortalENSG00000186854
TCGA cBioPortalTRABD2A
AceView (NCBI)TRABD2A
Genatlas (Paris)TRABD2A
WikiGenes129293
SOURCE (Princeton)TRABD2A
Genetics Home Reference (NIH)TRABD2A
Genomic and cartography
GoldenPath hg38 (UCSC)TRABD2A  -     chr2:84821667-84881245 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRABD2A  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblTRABD2A - 2p11.2 [CytoView hg19]  TRABD2A - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBITRABD2A [Mapview hg19]  TRABD2A [Mapview hg38]
OMIM614912   
Gene and transcription
Genbank (Entrez)AK128325 AK296608 AK309615 BC049209 BC051789
RefSeq transcript (Entrez)NM_001080824 NM_001277053 NM_001307978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRABD2A
Cluster EST : UnigeneHs.469134 [ NCBI ]
CGAP (NCI)Hs.469134
Alternative Splicing GalleryENSG00000186854
Gene ExpressionTRABD2A [ NCBI-GEO ]   TRABD2A [ EBI - ARRAY_EXPRESS ]   TRABD2A [ SEEK ]   TRABD2A [ MEM ]
Gene Expression Viewer (FireBrowse)TRABD2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129293
GTEX Portal (Tissue expression)TRABD2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V40
Splice isoforms : SwissVarQ86V40
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusQ86V40
Domains : Interpro (EBI)Pheromone_shutdown_TraB   
Domain families : Pfam (Sanger)TraB (PF01963)   
Domain families : Pfam (NCBI)pfam01963   
Conserved Domain (NCBI)TRABD2A
DMDM Disease mutations129293
Blocks (Seattle)TRABD2A
SuperfamilyQ86V40
Human Protein AtlasENSG00000186854
Peptide AtlasQ86V40
IPIIPI00910214   IPI00855732   
Protein Interaction databases
DIP (DOE-UCLA)Q86V40
IntAct (EBI)Q86V40
FunCoupENSG00000186854
BioGRIDTRABD2A
STRING (EMBL)TRABD2A
ZODIACTRABD2A
Ontologies - Pathways
QuickGOQ86V40
Ontology : AmiGOendopeptidase activity  metalloendopeptidase activity  metalloendopeptidase activity  integral component of plasma membrane  proteolysis  Wnt signaling pathway  Wnt-protein binding  negative regulation of Wnt signaling pathway  integral component of organelle membrane  positive regulation of protein oligomerization  metal ion binding  head development  positive regulation of protein oxidation  
Ontology : EGO-EBIendopeptidase activity  metalloendopeptidase activity  metalloendopeptidase activity  integral component of plasma membrane  proteolysis  Wnt signaling pathway  Wnt-protein binding  negative regulation of Wnt signaling pathway  integral component of organelle membrane  positive regulation of protein oligomerization  metal ion binding  head development  positive regulation of protein oxidation  
NDEx NetworkTRABD2A
Atlas of Cancer Signalling NetworkTRABD2A
Wikipedia pathwaysTRABD2A
Orthology - Evolution
OrthoDB129293
GeneTree (enSembl)ENSG00000186854
Phylogenetic Trees/Animal Genes : TreeFamTRABD2A
HOVERGENQ86V40
HOGENOMQ86V40
Homologs : HomoloGeneTRABD2A
Homology/Alignments : Family Browser (UCSC)TRABD2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRABD2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRABD2A
dbVarTRABD2A
ClinVarTRABD2A
1000_GenomesTRABD2A 
Exome Variant ServerTRABD2A
ExAC (Exome Aggregation Consortium)TRABD2A (select the gene name)
Genetic variants : HAPMAP129293
Genomic Variants (DGV)TRABD2A [DGVbeta]
DECIPHERTRABD2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRABD2A 
Mutations
ICGC Data PortalTRABD2A 
TCGA Data PortalTRABD2A 
Broad Tumor PortalTRABD2A
OASIS PortalTRABD2A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRABD2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRABD2A
DgiDB (Drug Gene Interaction Database)TRABD2A
DoCM (Curated mutations)TRABD2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRABD2A (select a term)
intoGenTRABD2A
Cancer3DTRABD2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614912   
Orphanet
MedgenTRABD2A
Genetic Testing Registry TRABD2A
NextProtQ86V40 [Medical]
TSGene129293
GENETestsTRABD2A
Target ValidationTRABD2A
Huge Navigator TRABD2A [HugePedia]
snp3D : Map Gene to Disease129293
BioCentury BCIQTRABD2A
ClinGenTRABD2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129293
Chemical/Pharm GKB GenePA165696373
Clinical trialTRABD2A
Miscellaneous
canSAR (ICR)TRABD2A (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRABD2A
EVEXTRABD2A
GoPubMedTRABD2A
iHOPTRABD2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:22 CEST 2017

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