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TRABD2B (TraB domain containing 2B)

Identity

Alias (NCBI)TIKI2
HGNC (Hugo) TRABD2B
HGNC Alias symbTIKI2
LocusID (NCBI) 388630
Atlas_Id 55093
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47760528 and ends at 47997385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRABD2B   44200
Cards
Entrez_Gene (NCBI)TRABD2B    TraB domain containing 2B
AliasesTIKI2
GeneCards (Weizmann)TRABD2B
Ensembl hg19 (Hinxton)ENSG00000269113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269113 [Gene_View]  ENSG00000269113 [Sequence]  chr1:47760528-47997385 [Contig_View]  TRABD2B [Vega]
ICGC DataPortalENSG00000269113
TCGA cBioPortalTRABD2B
AceView (NCBI)TRABD2B
Genatlas (Paris)TRABD2B
SOURCE (Princeton)TRABD2B
Genetics Home Reference (NIH)TRABD2B
Genomic and cartography
GoldenPath hg38 (UCSC)TRABD2B  -     chr1:47760528-47997385 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRABD2B  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathTRABD2B - 1p33 [CytoView hg19]  TRABD2B - 1p33 [CytoView hg38]
ImmunoBaseENSG00000269113
Genome Data Viewer NCBITRABD2B [Mapview hg19]  
OMIM614913   
Gene and transcription
Genbank (Entrez)AK090467 JQ653416
RefSeq transcript (Entrez)NM_001194986
Consensus coding sequences : CCDS (NCBI)TRABD2B
Gene ExpressionTRABD2B [ NCBI-GEO ]   TRABD2B [ EBI - ARRAY_EXPRESS ]   TRABD2B [ SEEK ]   TRABD2B [ MEM ]
Gene Expression Viewer (FireBrowse)TRABD2B [ Firebrowse - Broad ]
GenevisibleExpression of TRABD2B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388630
GTEX Portal (Tissue expression)TRABD2B
Human Protein AtlasENSG00000269113-TRABD2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFA1
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusA6NFA1
Domains : Interpro (EBI)TIKI1/2-like    TraB/PrgY/gumN_fam   
Domain families : Pfam (Sanger)TraB (PF01963)   
Domain families : Pfam (NCBI)pfam01963   
Conserved Domain (NCBI)TRABD2B
SuperfamilyA6NFA1
AlphaFold pdb e-kbA6NFA1   
Human Protein Atlas [tissue]ENSG00000269113-TRABD2B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NFA1
IntAct (EBI)A6NFA1
BioGRIDTRABD2B
STRING (EMBL)TRABD2B
ZODIACTRABD2B
Ontologies - Pathways
QuickGOA6NFA1
Ontology : AmiGOmetalloendopeptidase activity  metalloendopeptidase activity  protein binding  integral component of plasma membrane  integral component of plasma membrane  proteolysis  membrane  Wnt signaling pathway  Wnt-protein binding  Wnt-protein binding  Wnt-protein binding  negative regulation of Wnt signaling pathway  negative regulation of Wnt signaling pathway  integral component of organelle membrane  integral component of organelle membrane  positive regulation of protein-containing complex assembly  metal ion binding  positive regulation of protein oxidation  
Ontology : EGO-EBImetalloendopeptidase activity  metalloendopeptidase activity  protein binding  integral component of plasma membrane  integral component of plasma membrane  proteolysis  membrane  Wnt signaling pathway  Wnt-protein binding  Wnt-protein binding  Wnt-protein binding  negative regulation of Wnt signaling pathway  negative regulation of Wnt signaling pathway  integral component of organelle membrane  integral component of organelle membrane  positive regulation of protein-containing complex assembly  metal ion binding  positive regulation of protein oxidation  
NDEx NetworkTRABD2B
Atlas of Cancer Signalling NetworkTRABD2B
Wikipedia pathwaysTRABD2B
Orthology - Evolution
OrthoDB388630
GeneTree (enSembl)ENSG00000269113
Phylogenetic Trees/Animal Genes : TreeFamTRABD2B
Homologs : HomoloGeneTRABD2B
Homology/Alignments : Family Browser (UCSC)TRABD2B
Gene fusions - Rearrangements
Fusion : QuiverTRABD2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRABD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRABD2B
dbVarTRABD2B
ClinVarTRABD2B
MonarchTRABD2B
1000_GenomesTRABD2B 
Exome Variant ServerTRABD2B
GNOMAD BrowserENSG00000269113
Varsome BrowserTRABD2B
ACMGTRABD2B variants
VarityA6NFA1
Genomic Variants (DGV)TRABD2B [DGVbeta]
DECIPHERTRABD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRABD2B 
Mutations
ICGC Data PortalTRABD2B 
TCGA Data PortalTRABD2B 
Broad Tumor PortalTRABD2B
OASIS PortalTRABD2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRABD2B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRABD2B
Mutations and Diseases : HGMDTRABD2B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRABD2B
DgiDB (Drug Gene Interaction Database)TRABD2B
DoCM (Curated mutations)TRABD2B
CIViC (Clinical Interpretations of Variants in Cancer)TRABD2B
Cancer3DTRABD2B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614913   
Orphanet
DisGeNETTRABD2B
MedgenTRABD2B
Genetic Testing Registry TRABD2B
NextProtA6NFA1 [Medical]
GENETestsTRABD2B
Target ValidationTRABD2B
Huge Navigator TRABD2B [HugePedia]
ClinGenTRABD2B
Clinical trials, drugs, therapy
MyCancerGenomeTRABD2B
Protein Interactions : CTDTRABD2B
Pharm GKB GenePA166049114
PharosA6NFA1
Clinical trialTRABD2B
Miscellaneous
canSAR (ICR)TRABD2B
HarmonizomeTRABD2B
DataMed IndexTRABD2B
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRABD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:08 CEST 2021

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