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TRABD2B (TraB domain containing 2B)

Identity

Alias_symbol (synonym)TIKI2
Other alias
HGNC (Hugo) TRABD2B
LocusID (NCBI) 388630
Atlas_Id 55093
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47760528 and ends at 47996890 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRABD2B   44200
Cards
Entrez_Gene (NCBI)TRABD2B  388630  TraB domain containing 2B
AliasesTIKI2
GeneCards (Weizmann)TRABD2B
Ensembl hg19 (Hinxton)ENSG00000269113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269113 [Gene_View]  chr1:47760528-47996890 [Contig_View]  TRABD2B [Vega]
ICGC DataPortalENSG00000269113
TCGA cBioPortalTRABD2B
AceView (NCBI)TRABD2B
Genatlas (Paris)TRABD2B
WikiGenes388630
SOURCE (Princeton)TRABD2B
Genetics Home Reference (NIH)TRABD2B
Genomic and cartography
GoldenPath hg38 (UCSC)TRABD2B  -     chr1:47760528-47996890 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRABD2B  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblTRABD2B - 1p33 [CytoView hg19]  TRABD2B - 1p33 [CytoView hg38]
Mapping of homologs : NCBITRABD2B [Mapview hg19]  TRABD2B [Mapview hg38]
OMIM614913   
Gene and transcription
Genbank (Entrez)AK090467 JQ653416
RefSeq transcript (Entrez)NM_001194986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRABD2B
Cluster EST : UnigeneHs.61504 [ NCBI ]
CGAP (NCI)Hs.61504
Alternative Splicing GalleryENSG00000269113
Gene ExpressionTRABD2B [ NCBI-GEO ]   TRABD2B [ EBI - ARRAY_EXPRESS ]   TRABD2B [ SEEK ]   TRABD2B [ MEM ]
Gene Expression Viewer (FireBrowse)TRABD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388630
GTEX Portal (Tissue expression)TRABD2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFA1
Splice isoforms : SwissVarA6NFA1
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusA6NFA1
Domains : Interpro (EBI)Pheromone_shutdown_TraB   
Domain families : Pfam (Sanger)TraB (PF01963)   
Domain families : Pfam (NCBI)pfam01963   
Conserved Domain (NCBI)TRABD2B
DMDM Disease mutations388630
Blocks (Seattle)TRABD2B
SuperfamilyA6NFA1
Human Protein AtlasENSG00000269113
Peptide AtlasA6NFA1
IPIIPI00397764   IPI00937568   
Protein Interaction databases
DIP (DOE-UCLA)A6NFA1
IntAct (EBI)A6NFA1
FunCoupENSG00000269113
BioGRIDTRABD2B
STRING (EMBL)TRABD2B
ZODIACTRABD2B
Ontologies - Pathways
QuickGOA6NFA1
Ontology : AmiGOmetalloendopeptidase activity  protein binding  integral component of plasma membrane  proteolysis  Wnt signaling pathway  Wnt-protein binding  Wnt-protein binding  negative regulation of Wnt signaling pathway  integral component of organelle membrane  positive regulation of protein oligomerization  metal ion binding  extracellular exosome  positive regulation of protein oxidation  
Ontology : EGO-EBImetalloendopeptidase activity  protein binding  integral component of plasma membrane  proteolysis  Wnt signaling pathway  Wnt-protein binding  Wnt-protein binding  negative regulation of Wnt signaling pathway  integral component of organelle membrane  positive regulation of protein oligomerization  metal ion binding  extracellular exosome  positive regulation of protein oxidation  
NDEx NetworkTRABD2B
Atlas of Cancer Signalling NetworkTRABD2B
Wikipedia pathwaysTRABD2B
Orthology - Evolution
OrthoDB388630
GeneTree (enSembl)ENSG00000269113
Phylogenetic Trees/Animal Genes : TreeFamTRABD2B
HOVERGENA6NFA1
HOGENOMA6NFA1
Homologs : HomoloGeneTRABD2B
Homology/Alignments : Family Browser (UCSC)TRABD2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRABD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRABD2B
dbVarTRABD2B
ClinVarTRABD2B
1000_GenomesTRABD2B 
Exome Variant ServerTRABD2B
ExAC (Exome Aggregation Consortium)TRABD2B (select the gene name)
Genetic variants : HAPMAP388630
Genomic Variants (DGV)TRABD2B [DGVbeta]
DECIPHERTRABD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRABD2B 
Mutations
ICGC Data PortalTRABD2B 
TCGA Data PortalTRABD2B 
Broad Tumor PortalTRABD2B
OASIS PortalTRABD2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRABD2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRABD2B
DgiDB (Drug Gene Interaction Database)TRABD2B
DoCM (Curated mutations)TRABD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRABD2B (select a term)
intoGenTRABD2B
Cancer3DTRABD2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614913   
Orphanet
MedgenTRABD2B
Genetic Testing Registry TRABD2B
NextProtA6NFA1 [Medical]
TSGene388630
GENETestsTRABD2B
Huge Navigator TRABD2B [HugePedia]
snp3D : Map Gene to Disease388630
BioCentury BCIQTRABD2B
ClinGenTRABD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388630
Chemical/Pharm GKB GenePA166049114
Clinical trialTRABD2B
Miscellaneous
canSAR (ICR)TRABD2B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRABD2B
EVEXTRABD2B
GoPubMedTRABD2B
iHOPTRABD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:02 CEST 2017

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