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TRAC (T-cell receptor alpha constant)

Identity

Alias_namesT cell receptor alpha constant
Other aliasIMD7
TCRA
TRA
TRCA
HGNC (Hugo) TRAC
LocusID (NCBI) 28755
Atlas_Id 75098
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21894433 and ends at 22552149 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRAC   12029
Cards
Entrez_Gene (NCBI)TRAC  28755  T-cell receptor alpha constant
AliasesIMD7; TCRA; TRA; TRCA
GeneCards (Weizmann)TRAC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:21894433-22552149 [Contig_View]  TRAC [Vega]
TCGA cBioPortalTRAC
AceView (NCBI)TRAC
Genatlas (Paris)TRAC
WikiGenes28755
SOURCE (Princeton)TRAC
Genetics Home Reference (NIH)TRAC
Genomic and cartography
GoldenPath hg38 (UCSC)TRAC  -     chr14:21894433-22552149 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAC  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblTRAC - 14q11.2 [CytoView hg19]  TRAC - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBITRAC [Mapview hg19]  TRAC [Mapview hg38]
OMIM186880   615387   
Gene and transcription
Genbank (Entrez)X02592
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAC
Cluster EST : UnigeneHs.74647 [ NCBI ]
CGAP (NCI)Hs.74647
Gene ExpressionTRAC [ NCBI-GEO ]   TRAC [ EBI - ARRAY_EXPRESS ]   TRAC [ SEEK ]   TRAC [ MEM ]
Gene Expression Viewer (FireBrowse)TRAC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28755
GTEX Portal (Tissue expression)TRAC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01848   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01848  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01848
Splice isoforms : SwissVarP01848
PhosPhoSitePlusP01848
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    TCR_alpha_C   
Domain families : Pfam (Sanger)DUF1968 (PF09291)   
Domain families : Pfam (NCBI)pfam09291   
Conserved Domain (NCBI)TRAC
DMDM Disease mutations28755
Blocks (Seattle)TRAC
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP01848
Peptide AtlasP01848
Protein Interaction databases
DIP (DOE-UCLA)P01848
IntAct (EBI)P01848
BioGRIDTRAC
STRING (EMBL)TRAC
ZODIACTRAC
Ontologies - Pathways
QuickGOP01848
Ontology : AmiGOplasma membrane  integral component of membrane  T cell costimulation  regulation of immune response  T cell receptor signaling pathway  
Ontology : EGO-EBIplasma membrane  integral component of membrane  T cell costimulation  regulation of immune response  T cell receptor signaling pathway  
NDEx NetworkTRAC
Atlas of Cancer Signalling NetworkTRAC
Wikipedia pathwaysTRAC
Orthology - Evolution
OrthoDB28755
Phylogenetic Trees/Animal Genes : TreeFamTRAC
HOVERGENP01848
HOGENOMP01848
Homologs : HomoloGeneTRAC
Homology/Alignments : Family Browser (UCSC)TRAC
Gene fusions - Rearrangements
Fusion : QuiverTRAC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAC
dbVarTRAC
ClinVarTRAC
1000_GenomesTRAC 
Exome Variant ServerTRAC
Genetic variants : HAPMAP28755
Genomic Variants (DGV)TRAC [DGVbeta]
DECIPHERTRAC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAC 
Mutations
ICGC Data PortalTRAC 
TCGA Data PortalTRAC 
Broad Tumor PortalTRAC
OASIS PortalTRAC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRAC
BioMutasearch TRAC
DgiDB (Drug Gene Interaction Database)TRAC
DoCM (Curated mutations)TRAC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAC (select a term)
intoGenTRAC
Cancer3DTRAC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186880    615387   
Orphanet22712   
DisGeNETTRAC
MedgenTRAC
Genetic Testing Registry TRAC
NextProtP01848 [Medical]
TSGene28755
GENETestsTRAC
Target ValidationTRAC
Huge Navigator TRAC [HugePedia]
snp3D : Map Gene to Disease28755
BioCentury BCIQTRAC
ClinGenTRAC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28755
Chemical/Pharm GKB GenePA36706
Clinical trialTRAC
Miscellaneous
canSAR (ICR)TRAC (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAC
EVEXTRAC
GoPubMedTRAC
iHOPTRAC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:56:36 CET 2018

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