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TRADD (TNFRSF1A-associated via death domain)

Identity

Other namesHs.89862
HGNC (Hugo) TRADD
LocusID (NCBI) 8717
Location 16q22.1
Location_base_pair Starts at 67188089 and ends at 67193812 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRADD   12030
Entrez_Gene (NCBI)TRADD  8717  TNFRSF1A-associated via death domain
Cards
GeneCards (Weizmann)TRADD
Ensembl (Hinxton)ENSG00000102871 [Gene_View]  chr16:67188089-67193812 [Contig_View]  TRADD [Vega]
AceView (NCBI)TRADD
Genatlas (Paris)TRADD
SOURCE (Stanford)NM_003789 NM_153425
Genomic and cartography
GoldenPath (UCSC)TRADD  -  16q22.1   chr16:67188089-67193812 -  16q22.1   [Description]    (hg19-Feb_2009)
EnsemblTRADD - 16q22.1 [CytoView]
Mapping of homologs : NCBITRADD [Mapview]
OMIM603500   
Gene and transcription
Genbank (Entrez)AK090673 AK301593 AK315654 BC004491 BG717460
RefSeq transcript (SRS)NM_003789 NM_153425
RefSeq transcript (Entrez)NM_003789 NM_153425
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838290 NW_004078087
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838290 NW_004078087
Consensus coding sequences : CCDS (NCBI)TRADD
Cluster EST : UnigeneHs.460996 [ SRS ] Hs.460996 [ NCBI ]
CGAP (NCI)Hs.460996
Alternative Splicing : Fast-db (Paris)GSHG0011904
Alternative Splicing GalleryENSG00000102871
Gene ExpressionTRADD [ NCBI-GEO ]   TRADD [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15628 (SRS) Q15628 (Uniprot)
NextProtQ15628
With graphics : InterProQ15628
Splice isoforms : SwissVarQ15628(Swissvar)
Domaine pattern : Prosite (SRS)DEATH_DOMAIN (PS50017)   
Domaine pattern : Prosite (Expaxy)DEATH_DOMAIN (PS50017)   
Domains : Interpro (SRS)Death    DEATH-like    TRADD_N   
Domains : Interpro (EBI)Death    DEATH-like    TRADD_N   
Related proteins : CluSTrQ15628
Domain families : Pfam (SRS)Death (PF00531)    TRADD_N (PF09034)   
Domain families : Pfam (Sanger)Death (PF00531)    TRADD_N (PF09034)   
Domain families : Pfam (NCBI)pfam00531    pfam09034   
Domain families : Smart (EMBL)DEATH (SM00005)  
Domain structure : Prodom (Prabi Lyon)TRADD_N (PD182470)   
DMDM8717
Blocks (Seattle)Q15628
PDB (SRS)1F2H    1F3V   
PDB (PDBSum)1F2H    1F3V   
PDB (IMB)1F2H    1F3V   
PDB (RSDB)1F2H    1F3V   
Human Protein AtlasENSG00000102871
HPRD04610
IPIIPI00018744   IPI00910743   
Protein Interaction databases
DIP (DOE-UCLA)Q15628
IntAct (EBI)Q15628
FunCoupENSG00000102871
REACTOMETRADD
Protein Interaction Database8717
BioGRIDTRADD
InParanoidQ15628
Interologous Interaction database Q15628
IntegromeDBTRADD
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRADD
SNP (GeneSNP Utah)TRADD
SNP : HGBaseTRADD
Genetic variants : HAPMAPTRADD
Somatic Mutations in Cancer : COSMICTRADD 
CONAN: Copy Number AnalysisTRADD 
Mutations and Diseases : HGMDTRADD
OMIM603500   
GENETests603500   
Disease Genetic AssociationTRADD
Huge Navigator TRADD [HugePedia]  TRADD [HugeCancerGEM]
Genomic VariantsTRADD  TRADD [DGVbeta]
snp3D : Map Gene to Disease8717
General knowledge
Homologs : HomoloGeneTRADD
Homology/Alignments : Family Browser (UCSC)TRADD
Phylogenetic Trees/Animal Genes : TreeFamTRADD
Chemical/Protein Interactions : CTD8717
Chemical/Pharm GKB GenePA36707
Clinical trialTRADD
Cancer Resource (Charite)ENSG00000102871
Ontology : AmiGOsignal transducer activity  protein binding  nucleus  cytoplasm  cytosol  cytoskeleton  apoptotic process  induction of apoptosis  activation of cysteine-type endopeptidase activity involved in apoptotic process  signal transduction  kinase binding  tumor necrosis factor-mediated signaling pathway  identical protein binding  positive regulation of I-kappaB kinase/NF-kappaB cascade  receptor complex  positive regulation of hair follicle development  binding, bridging  death domain binding  extrinsic apoptotic signaling pathway  extrinsic apoptotic signaling pathway  
Ontology : EGO-EBIsignal transducer activity  protein binding  nucleus  cytoplasm  cytosol  cytoskeleton  apoptotic process  induction of apoptosis  activation of cysteine-type endopeptidase activity involved in apoptotic process  signal transduction  kinase binding  tumor necrosis factor-mediated signaling pathway  identical protein binding  positive regulation of I-kappaB kinase/NF-kappaB cascade  receptor complex  positive regulation of hair follicle development  binding, bridging  death domain binding  extrinsic apoptotic signaling pathway  extrinsic apoptotic signaling pathway  
Pathways : BIOCARTAHIV-I Nef: negative effector of Fas and TNF [Genes]    Induction of apoptosis through DR3 and DR4/5 Death Receptors [Genes]    Ceramide Signaling Pathway [Genes]    TNFR1 Signaling Pathway [Genes]    MAPKinase Signaling Pathway [Genes]    NF-kB Signaling Pathway [Genes]    Acetylation and Deacetylation of RelA in The Nucleus [Genes]    p38 MAPK Signaling Pathway [Genes]    TNF/Stress Related Signaling [Genes]    SODD/TNFR1 Signaling Pathway [Genes]   
Pathways : KEGGApoptosisAdipocytokine signaling pathway
Other databases
Probes
Litterature
PubMed102 Pubmed reference(s) in Entrez
PubGeneTRADD
iHOPTRADD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:49 CEST 2013
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