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TRAF1 (TNF receptor associated factor 1)

Identity

Alias_symbol (synonym)EBI6
Other aliasMGC:10353
HGNC (Hugo) TRAF1
LocusID (NCBI) 7185
Atlas_Id 42686
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 120902393 and ends at 120926895 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRAF1 (9q33.2) / ALK (2p23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias t0209p23q33ID1685


External links

Nomenclature
HGNC (Hugo)TRAF1   12031
Cards
Entrez_Gene (NCBI)TRAF1  7185  TNF receptor associated factor 1
AliasesEBI6; MGC:10353
GeneCards (Weizmann)TRAF1
Ensembl hg19 (Hinxton)ENSG00000056558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000056558 [Gene_View]  ENSG00000056558 [Sequence]  chr9:120902393-120926895 [Contig_View]  TRAF1 [Vega]
ICGC DataPortalENSG00000056558
TCGA cBioPortalTRAF1
AceView (NCBI)TRAF1
Genatlas (Paris)TRAF1
WikiGenes7185
SOURCE (Princeton)TRAF1
Genetics Home Reference (NIH)TRAF1
Genomic and cartography
GoldenPath hg38 (UCSC)TRAF1  -     chr9:120902393-120926895 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAF1  -     9q33.2   [Description]    (hg19-Feb_2009)
GoldenPathTRAF1 - 9q33.2 [CytoView hg19]  TRAF1 - 9q33.2 [CytoView hg38]
ImmunoBaseENSG00000056558
Mapping of homologs : NCBITRAF1 [Mapview hg19]  TRAF1 [Mapview hg38]
OMIM601711   
Gene and transcription
Genbank (Entrez)AK090468 AK295959 AK315476 AL832989 AW014547
RefSeq transcript (Entrez)NM_001190945 NM_001190947 NM_005658
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAF1
Alternative Splicing GalleryENSG00000056558
Gene ExpressionTRAF1 [ NCBI-GEO ]   TRAF1 [ EBI - ARRAY_EXPRESS ]   TRAF1 [ SEEK ]   TRAF1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7185
GTEX Portal (Tissue expression)TRAF1
Human Protein AtlasENSG00000056558-TRAF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRAF1
DMDM Disease mutations7185
Blocks (Seattle)TRAF1
Human Protein Atlas [tissue]ENSG00000056558-TRAF1 [tissue]
HPRD03418
IPIIPI00011549   IPI00984225   
Protein Interaction databases
FunCoupENSG00000056558
BioGRIDTRAF1
STRING (EMBL)TRAF1
ZODIACTRAF1
Ontologies - Pathways
Huge Navigator TRAF1 [HugePedia]
snp3D : Map Gene to Disease7185
BioCentury BCIQTRAF1
ClinGenTRAF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7185
Chemical/Pharm GKB GenePA36708
Clinical trialTRAF1
Miscellaneous
canSAR (ICR)TRAF1 (select the gene name)
DataMed IndexTRAF1
Probes
Litterature
PubMed209 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAF1
EVEXTRAF1
GoPubMedTRAF1
iHOPTRAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:14:07 CET 2020

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