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TRAF3IP2-AS1 (TRAF3IP2 antisense RNA 1)

Identity

Alias_namesTRAF3IP2-AS2
C6orf3
NCRNA00248
TRAF3IP2 antisense RNA 2 (non-protein coding)
chromosome 6 open reading frame 3
non-protein coding RNA 248
TRAF3IP2 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)C6UAS
Other alias
HGNC (Hugo) TRAF3IP2-AS1
LocusID (NCBI) 643749
Atlas_Id 75099
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 111483472 and ends at 111602294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CUEDC2 (10q24.32) / TRAF3IP2-AS1 (6q21)EFCAB6 (22q13.2) / TRAF3IP2-AS1 (6q21)RAC1 (7p22.1) / TRAF3IP2-AS1 (6q21)
TRAF3IP2-AS1 (6q21) / MEF2C (5q14.3)TRAF3IP2-AS1 (6q21) / TRAF3IP2-AS1 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAF3IP2-AS1   40005
Cards
Entrez_Gene (NCBI)TRAF3IP2-AS1  643749  TRAF3IP2 antisense RNA 1
AliasesC6UAS; C6orf3; NCRNA00248; TRAF3IP2-AS2
GeneCards (Weizmann)TRAF3IP2-AS1
Ensembl hg19 (Hinxton)ENSG00000231889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231889 [Gene_View]  chr6:111483472-111602294 [Contig_View]  TRAF3IP2-AS1 [Vega]
ICGC DataPortalENSG00000231889
TCGA cBioPortalTRAF3IP2-AS1
AceView (NCBI)TRAF3IP2-AS1
Genatlas (Paris)TRAF3IP2-AS1
WikiGenes643749
SOURCE (Princeton)TRAF3IP2-AS1
Genetics Home Reference (NIH)TRAF3IP2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TRAF3IP2-AS1  -     chr6:111483472-111602294 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAF3IP2-AS1  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblTRAF3IP2-AS1 - 6q21 [CytoView hg19]  TRAF3IP2-AS1 - 6q21 [CytoView hg38]
Mapping of homologs : NCBITRAF3IP2-AS1 [Mapview hg19]  TRAF3IP2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF136408 BC031311 BC043575 BX647114
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAF3IP2-AS1
Cluster EST : UnigeneHs.486228 [ NCBI ]
CGAP (NCI)Hs.486228
Alternative Splicing GalleryENSG00000231889
Gene ExpressionTRAF3IP2-AS1 [ NCBI-GEO ]   TRAF3IP2-AS1 [ EBI - ARRAY_EXPRESS ]   TRAF3IP2-AS1 [ SEEK ]   TRAF3IP2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAF3IP2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643749
GTEX Portal (Tissue expression)TRAF3IP2-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRAF3IP2-AS1
DMDM Disease mutations643749
Blocks (Seattle)TRAF3IP2-AS1
Human Protein AtlasENSG00000231889
Protein Interaction databases
FunCoupENSG00000231889
BioGRIDTRAF3IP2-AS1
STRING (EMBL)TRAF3IP2-AS1
ZODIACTRAF3IP2-AS1
Ontologies - Pathways
Huge Navigator TRAF3IP2-AS1 [HugePedia]
snp3D : Map Gene to Disease643749
BioCentury BCIQTRAF3IP2-AS1
ClinGenTRAF3IP2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643749
Chemical/Pharm GKB GenePA25931
Clinical trialTRAF3IP2-AS1
Miscellaneous
canSAR (ICR)TRAF3IP2-AS1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAF3IP2-AS1
EVEXTRAF3IP2-AS1
GoPubMedTRAF3IP2-AS1
iHOPTRAF3IP2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:53 CEST 2017

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