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TRAF3IP2 (TRAF3 interacting protein 2)

Identity

Other namesACT1
C6orf2
C6orf4
C6orf5
C6orf6
CANDF8
CIKS
PSORS13
HGNC (Hugo) TRAF3IP2
LocusID (NCBI) 10758
Location 6q21
Location_base_pair Starts at 111876581 and ends at 111927477 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRAF3IP2   1343
Cards
Entrez_Gene (NCBI)TRAF3IP2  10758  TRAF3 interacting protein 2
GeneCards (Weizmann)TRAF3IP2
Ensembl hg19 (Hinxton)ENSG00000056972 [Gene_View]  chr6:111876581-111927477 [Contig_View]  TRAF3IP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000056972 [Gene_View]  chr6:111876581-111927477 [Contig_View]  TRAF3IP2 [Vega]
ICGC DataPortalENSG00000056972
cBioPortalTRAF3IP2
AceView (NCBI)TRAF3IP2
Genatlas (Paris)TRAF3IP2
WikiGenes10758
SOURCE (Princeton)TRAF3IP2
Genomic and cartography
GoldenPath hg19 (UCSC)TRAF3IP2  -     chr6:111876581-111927477 -  6q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAF3IP2  -     6q21   [Description]    (hg38-Dec_2013)
EnsemblTRAF3IP2 - 6q21 [CytoView hg19]  TRAF3IP2 - 6q21 [CytoView hg38]
Mapping of homologs : NCBITRAF3IP2 [Mapview hg19]  TRAF3IP2 [Mapview hg38]
OMIM607043   614070   615527   
Gene and transcription
Genbank (Entrez)AF085921 AF136405 AF136406 AF136407 AF272151
RefSeq transcript (Entrez)NM_001164281 NM_001164282 NM_001164283 NM_147200 NM_147686
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_032030 NT_025741 NW_001838990 NW_004929328
Consensus coding sequences : CCDS (NCBI)TRAF3IP2
Cluster EST : UnigeneHs.740602 [ NCBI ]
CGAP (NCI)Hs.740602
Alternative Splicing : Fast-db (Paris)GSHG0026843
Alternative Splicing GalleryENSG00000056972
Gene ExpressionTRAF3IP2 [ NCBI-GEO ]     TRAF3IP2 [ SEEK ]   TRAF3IP2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43734 (Uniprot)
NextProtO43734  [Medical]
With graphics : InterProO43734
Splice isoforms : SwissVarO43734 (Swissvar)
Domaine pattern : Prosite (Expaxy)SEFIR (PS51534)   
Domains : Interpro (EBI)SEFIR   
Related proteins : CluSTrO43734
Domain families : Pfam (Sanger)SEFIR (PF08357)   
Domain families : Pfam (NCBI)pfam08357   
DMDM Disease mutations10758
Blocks (Seattle)O43734
Human Protein AtlasENSG00000056972
Peptide AtlasO43734
HPRD06129
IPIIPI00013883   IPI00170492   IPI00647288   IPI00478211   IPI00644010   
Protein Interaction databases
DIP (DOE-UCLA)O43734
IntAct (EBI)O43734
FunCoupENSG00000056972
BioGRIDTRAF3IP2
IntegromeDBTRAF3IP2
STRING (EMBL)TRAF3IP2
Ontologies - Pathways
QuickGOO43734
Ontology : AmiGOB cell apoptotic process  protein binding  cellular_component  humoral immune response  intracellular signal transduction  positive regulation of I-kappaB kinase/NF-kappaB signaling  immunoglobulin secretion  
Ontology : EGO-EBIB cell apoptotic process  protein binding  cellular_component  humoral immune response  intracellular signal transduction  positive regulation of I-kappaB kinase/NF-kappaB signaling  immunoglobulin secretion  
Protein Interaction DatabaseTRAF3IP2
DoCM (Curated mutations)TRAF3IP2
Wikipedia pathwaysTRAF3IP2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTRAF3IP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAF3IP2
dbVarTRAF3IP2
ClinVarTRAF3IP2
1000_GenomesTRAF3IP2 
Exome Variant ServerTRAF3IP2
SNP (GeneSNP Utah)TRAF3IP2
SNP : HGBaseTRAF3IP2
Genetic variants : HAPMAPTRAF3IP2
Genomic VariantsTRAF3IP2  TRAF3IP2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000056972 
Somatic Mutations in Cancer : COSMICTRAF3IP2 
CONAN: Copy Number AnalysisTRAF3IP2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:111876581-111927477
Mutations and Diseases : HGMDTRAF3IP2
OMIM607043    614070    615527   
MedgenTRAF3IP2
NextProtO43734 [Medical]
GENETestsTRAF3IP2
Disease Genetic AssociationTRAF3IP2
Huge Navigator TRAF3IP2 [HugePedia]  TRAF3IP2 [HugeCancerGEM]
snp3D : Map Gene to Disease10758
DGIdb (Drug Gene Interaction db)TRAF3IP2
General knowledge
Homologs : HomoloGeneTRAF3IP2
Homology/Alignments : Family Browser (UCSC)TRAF3IP2
Phylogenetic Trees/Animal Genes : TreeFamTRAF3IP2
Chemical/Protein Interactions : CTD10758
Chemical/Pharm GKB GenePA25938
Clinical trialTRAF3IP2
Cancer Resource (Charite)ENSG00000056972
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
CoreMineTRAF3IP2
GoPubMedTRAF3IP2
iHOPTRAF3IP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 02:03:24 CET 2014

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